MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-34-P5b

Family name MIR-34 (all species)
Seed GGCAGUG
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-34c-2
Paralogues Bfl-Mir-34-P5a  Bfl-Mir-34-P6a  Bfl-Mir-34-P6b  Bfl-Mir-34-P7  Bfl-Mir-34-P8 
Orthologues Aae-Mir-34  Aga-Mir-34  Agr-Mir-34  Asu-Mir-34  Bge-Mir-34  Bla-Mir-34-P5  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Isc-Mir-34  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Mgi-Mir-34  Mom-Mir-34  Npo-Mir-34  Obi-Mir-34  Ofu-Mir-34  Ovu-Mir-34  Pau-Mir-34  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pmi-Mir-34  Pve-Mir-34  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spu-Mir-34  Tca-Mir-34  Tur-Mir-34  War-Mir-34 
Node of Origin (locus) B. floridae
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049996.1: 202785-202846 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-34-P5b)		 Mir-34-P6b NC_049996.1: 202038-202094 [-] UCSC
Mir-34-P5b NC_049996.1: 202785-202846 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UUUGGUAUAUCCAAACCUCGUGCAGCCAUCUGGCAGUGUUGUUAGCUGGCCGCUAGGAGUCGCUCUUUAGGCCCUCUAUCAACGCUGCCCUACGGAAGCGCGACACGUCAUCAUGUAAAUAU
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Structure
        10          20        30        40        50        60
UUUGGUAUAUCCAAACC--|     AG  AUCU          U   CU    GCUAGGAG 
                   UCGUGC  CC    GGCAGUGUUG UAG  GGCC        U
                   AGCGCG  GG    CCGUCGCAAC AUC  CCGG        C
UAUAAAUGUACUACUGCAC^     AA  CAUC          U   UC    AUUUCUCG 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Bfl-Mir-34-P5b_5p
mirBase accessionNone
Sequence 
0- UGGCAGUGUUGUUAGCUGGCCG -22
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Star sequence

Bfl-Mir-34-P5b_3p*
mirBase accessionMIMAT0020451
Sequence 
40- GCCCUCUAUCAACGCUGCCCUA -62
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