MirGeneDB 2.1
MirGeneDB ID

Bfl-Mir-4860

Family name MIR-4860 (all species)
Seed GUAGAGA
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-4860
Paralogues
Orthologues Bla-Mir-4860 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049983.1: 11749662-11749723 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-4860)		 Mir-4865-v1 NC_049983.1: 11748784-11748850 [+] UCSC
Mir-4865-v2 NC_049983.1: 11748784-11748850 [+] UCSC
Mir-4860 NC_049983.1: 11749662-11749723 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CUCCCCUGCUGCUGACUGGGUGGGACUCUCUGCCUGUCAACGUCUCUGUACAGUGAACAUGAGGCAUGUGUAGAGAUUGUGUGACGGGUAGUGAGCCCCCAGCCCUUCUCCUCAUCUCAUCU
Get precursor sequence
Structure
        10         20         30         40         50         
CUCCCCUGCUGCUGACU-  G    A-   U          -  -|          GUGAAC 
                  GG UGGG  CUC CUGCCUGUCA AC GUCUCUGUACA      A
                  CC ACCC  GAG GAUGGGCAGU UG UAGAGAUGUGU      U
UCUACUCUACUCCUCUUC  G    CC   U          G  U^          ACGGAG 
120       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Bfl-Mir-4860_5p*
mirBase accessionMIMAT0020088
Sequence 
0- UGCCUGUCAACGUCUCUGUACA -22
Get sequence
Mature sequence

Bfl-Mir-4860_3p
mirBase accessionMIMAT0020089
Sequence 
38- UGUAGAGAUUGUGUGACGGGUAGU -62
Get sequence