MirGeneDB 2.1
MirGeneDB ID

Bfl-Mir-4865-v2

Family name MIR-4865 (all species)
Seed UGUAGAG
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-4865
Paralogues Bfl-Mir-4865-v1 
Orthologues Bla-Mir-4865-v2 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049983.1: 11748784-11748850 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-4865-v2)		 Mir-4865-v1 NC_049983.1: 11748784-11748850 [+] UCSC
Mir-4865-v2 NC_049983.1: 11748784-11748850 [+] UCSC
Mir-4860 NC_049983.1: 11749662-11749723 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AGAGUGGCUUGUGAACUUUGUGUGCCUGCUGGCUUGUCACUUCCAAUACAUGCUGUGGUCCCACCAUCCCGUCCAUGUAGAGAGAGUGACAGGUUGUCGGGCCUCAGACUUGUCUCCCAGUUAUUUA
Get precursor sequence
Structure
        10           20        30        40        50        60   
AGAGUGGCUUGUGAACU---|  UGU     C             CCAA      CUGUGGUCCC 
                    UUG   GCCUG UGGCUUGUCACUU    UACAUG          \
                    GAC   CGGGC GUUGGACAGUGAG    AUGUAC          A
AUUUAUUGACCCUCUGUUCA^  UC-     U             AGAG      CUGCCCUACC 
     120       110        100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Bfl-Mir-4865-v2_5p*
mirBase accessionMIMAT0020099
Sequence 
0- GGCUUGUCACUUCCAAUACAUGC -23
Get sequence
Mature sequence

Bfl-Mir-4865-v2_3p
mirBase accessionMIMAT0020100
Sequence 
44- AUGUAGAGAGAGUGACAGGUUGU -67
Get sequence