| MirGeneDB ID | Bko-Mir-12600 |
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| Family name |
MIR-12600 (all species) |
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| Seed |
GACUAGG |
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| Species |
Monogonont Rotifer 2 (Brachionus koreanus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Bpl-Mir-12600
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| Node of Origin (locus) |
Brachionus
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| Node of Origin (family) |
Brachionus
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Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom) |
PJRA01000160.1: 1160233-1160293 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUUUUGUUUCUGGAUUUAGAGCAAUCUGCGUGCCAGACUGUGCUUAGUUACGCUAGAUUAGAAUAAUGCUGACUAGGCUCAGUUCGGUAAUAAUCCGGUUCUGUUGAAUUUCAAUUUUUAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CUUUUGUUUCUGGAUUU--| AAUCUGCG AG U C UAGAUU
AGAGC UGCC ACUG GCUUAGUUA GC A
UCUUG AUGG UGAC CGGAUCAGU CG G
UAUUUUUAACUUUAAGUUG^ GCCUAAUA CU U - UAAUAA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | The 3' end of the 5p arm may be monouridylated. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
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| Star sequence |
Bko-Mir-12600_5p* |
| mirBase accession | None |
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| Sequence |
0- UGCCAGACUGUGCUUAGUUACGC -23
Get sequence
|
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| Mature sequence |
Bko-Mir-12600_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UGACUAGGCUCAGUUCGGUAAU -61
Get sequence
|
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