| MirGeneDB ID | Bpl-Mir-12600 |
|---|
| Family name |
MIR-12600 (all species) |
|---|
| Seed |
GACUAGG |
|---|
| Species |
Monogonont Rotifer 1 (Brachionus plicatilis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bko-Mir-12600
|
|---|
| Node of Origin (locus) |
Brachionus
|
|---|
| Node of Origin (family) |
Brachionus
|
|---|
Genome context
(Bpl_ASM1027981) |
QEOQ01000041.1: 165073-165130 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUUUUGUUUCUGGAUUUAAAGCAAUCUGCGUGCCAGACUGUUCUUAGUUACGCUAGAUUAGAAUGCUGACUAGGUCGGAUUUGGUAAUAAUCCGGGUCUGUUGAAUUUCAAUUUUUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUUUUGUUUCUGGAUUUAAAG - CG---- -| UU C UAGAU
CA AUCUG UGCCAGA CUG CUUAGUUA GC \
GU UGGGC AUGGUUU GGC GGAUCAGU CG U
UUUUUUUAACUUUAAGUU--- C CUAAUA A^ U- - UAAGA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Bpl-Mir-12600_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UGCCAGACUGUUCUUAGUUACGCU -24
Get sequence
|
|---|
| Mature sequence |
Bpl-Mir-12600_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
36- UGACUAGGUCGGAUUUGGUAAU -58
Get sequence
|
|---|
