MirGeneDB ID | Bko-Mir-12601-P1a |
Family name |
MIR-12601 (all species) |
Seed |
AGGCCAU |
Species |
Monogonont Rotifer 2 (Brachionus koreanus) |
MiRBase ID |
|
Paralogues |
Bko-Mir-12601-P1b
|
Orthologues |
Bpl-Mir-12601
|
Node of Origin (locus) |
B. koreanus
|
Node of Origin (family) |
Brachionus
|
Genome context (Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom) |
PJRA01000274.1: 804124-804186 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUUCUAGUACUCAAUAGACGCAUAAUAUUUUAGGCCAUCUUAUUAUUUAUGUUAUAAAUAGACGUAAAAUACAUAAACAUAAAAUGGUCUAAAAUAUUACGUUUUCGGUCAUCUAAAUGUUGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUUCUAGUACUCAAUAG----| CA C UA UAUAAAUA
ACG UAAUAUUUUAGGCCAU UUAU UUUAUGU G
UGC AUUAUAAAAUCUGGUA AAUA AAAUACA A
CGUUGUAAAUCUACUGGCUUU^ -- A C- UAAAAUGC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | The 3' end of the 5p arm may be monouridylated. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Bko-Mir-12601-P1a_5p |
mirBase accession | None |
Sequence |
0- UAGGCCAUCUUAUUAUUUAUGU -22
Get sequence
|
Star sequence |
Bko-Mir-12601-P1a_3p* |
mirBase accession | None |
Sequence |
42- AUAAACAUAAAAUGGUCUAAA -63
Get sequence
|