| MirGeneDB ID | Bpl-Mir-12601 |
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| Family name |
MIR-12601 (all species) |
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| Seed |
AGGCCAU |
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| Species |
Monogonont Rotifer 1 (Brachionus plicatilis) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Bko-Mir-12601-P1a
Bko-Mir-12601-P1b
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| Node of Origin (locus) |
Brachionus
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| Node of Origin (family) |
Brachionus
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Genome context
(Bpl_ASM1027981) |
QEOQ01000590.1: 664374-664431 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUUCUCGGGCUCAAUAAUCGCCUAAUAUCUUAGGCCAUCUUAUUAUUUAUGUUAUAAACAGACAUACAUAAACAUAAAAUGGUCUAAAAUAUUGCGUUUUCGGUCAUCAAAGUGUUAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUUCUCGGGCUCAAUAAU----| CU C C UA UAUAAA
CGC AAUAU UUAGGCCAU UUAU UUUAUGU \
GCG UUAUA AAUCUGGUA AAUA AAAUACA C
CAUUGUGAAACUACUGGCUUUU^ -- A A C- UACAGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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|
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| Mature sequence |
Bpl-Mir-12601_5p |
| mirBase accession | None |
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| Sequence |
0- UAGGCCAUCUUAUUAUUUAUGU -22
Get sequence
|
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| Star sequence |
Bpl-Mir-12601_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- AUAAACAUAAAAUGGUCUAAA -58
Get sequence
|
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