| MirGeneDB ID | Bko-Mir-12601-P1b |
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| Family name |
MIR-12601 (all species) |
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| Seed |
AGGCCAU |
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| Species |
Monogonont Rotifer 2 (Brachionus koreanus) |
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| MiRBase ID |
|
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| Paralogues |
Bko-Mir-12601-P1a
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| Orthologues |
Bpl-Mir-12601
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| Node of Origin (locus) |
B. koreanus
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| Node of Origin (family) |
Brachionus
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Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom) |
PJRA01000313.1: 3156736-3156798 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUUCGAGUACUCAAUAGACGCAUAAUAUUUUAGGCCAUCUUAUUAUUUAUGUUAUAAAUAGACGUAAAAUACAUAAACAUAAAAUGGUCUAAAAUAUUACGUUUUCGGUCAUCUAAAUGUUGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AUUCGAGUACUCAAUAG----| CA C UA UAUAAAUA
ACG UAAUAUUUUAGGCCAU UUAU UUUAUGU G
UGC AUUAUAAAAUCUGGUA AAUA AAAUACA A
CGUUGUAAAUCUACUGGCUUU^ -- A C- UAAAAUGC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | The 3' end of the 5p arm may be monouridylated. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
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| Mature sequence |
Bko-Mir-12601-P1b_5p |
| mirBase accession | None |
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| Sequence |
0- UAGGCCAUCUUAUUAUUUAUGU -22
Get sequence
|
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| Star sequence |
Bko-Mir-12601-P1b_3p* |
| mirBase accession | None |
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| Sequence |
42- AUAAACAUAAAAUGGUCUAAA -63
Get sequence
|
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