MirGeneDB 3.0

MirGeneDB ID

Bko-Mir-12602

Family name MIR-12602 (all species)
Seed UUCACAA
Species Monogonont Rotifer 2 (Brachionus koreanus)
MiRBase ID
Paralogues
Orthologues Bpl-Mir-12602 
Node of Origin (locus) Brachionus
Node of Origin (family) Brachionus
Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom)
PJRA01000313.1: 1985619-1985679 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAUUUAAAUUUACUUAUACUUAAUAUUACUAUGCUUCUCUUGUUGUGCAAAAUCUUGAAUUGAACUGAUUUCACAAUAGAGAGUAGCAUAGUAGAAUUAAGAAGAUAUCGUCAAAAUACUC
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Structure
        10          20        30        40         50        60
AAUUUAAAUUUACUUAUA--      A          U    -|      CA     UUGAA 
                    CUUAAU UUACUAUGCU CUCU UGUUGUG  AAAUC     U
                    GAAUUA GAUGAUACGA GAGA AUAACAC  UUUAG     U
CUCAUAAAACUGCUAUAGAA      A          U    G^      --     UCAAG 
 .       110       100        90        80          70
Deep sequencing
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CommentThe 3' end of the 5p arm may be monouridylated.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Bko-Mir-12602_5p*

mirBase accessionNone
Sequence
0- AUGCUUCUCUUGUUGUGCAAAAUC -24
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Mature sequence

Bko-Mir-12602_3p

mirBase accessionNone
Sequence
38- UUUCACAAUAGAGAGUAGCAUAG -61
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