MirGeneDB ID | Bko-Mir-12602 |
Family name |
MIR-12602 (all species) |
Seed |
UUCACAA |
Species |
Monogonont Rotifer 2 (Brachionus koreanus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bpl-Mir-12602
|
Node of Origin (locus) |
Brachionus
|
Node of Origin (family) |
Brachionus
|
Genome context (Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom) |
PJRA01000313.1: 1985619-1985679 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAUUUAAAUUUACUUAUACUUAAUAUUACUAUGCUUCUCUUGUUGUGCAAAAUCUUGAAUUGAACUGAUUUCACAAUAGAGAGUAGCAUAGUAGAAUUAAGAAGAUAUCGUCAAAAUACUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAUUUAAAUUUACUUAUA-- A U -| CA UUGAA
CUUAAU UUACUAUGCU CUCU UGUUGUG AAAUC U
GAAUUA GAUGAUACGA GAGA AUAACAC UUUAG U
CUCAUAAAACUGCUAUAGAA A U G^ -- UCAAG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | The 3' end of the 5p arm may be monouridylated. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Bko-Mir-12602_5p* |
mirBase accession | None |
Sequence |
0- AUGCUUCUCUUGUUGUGCAAAAUC -24
Get sequence
|
Mature sequence |
Bko-Mir-12602_3p |
mirBase accession | None |
Sequence |
38- UUUCACAAUAGAGAGUAGCAUAG -61
Get sequence
|