| MirGeneDB ID | Bpl-Mir-12602 |
|---|
| Family name |
MIR-12602 (all species) |
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| Seed |
UUCACAA |
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| Species |
Monogonont Rotifer 1 (Brachionus plicatilis) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bko-Mir-12602
|
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| Node of Origin (locus) |
Brachionus
|
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| Node of Origin (family) |
Brachionus
|
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Genome context
(Bpl_ASM1027981) |
QEOQ01000303.1: 258833-258893 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUAAUACUCUUUAAAAUACUUAGUUUAACUAUGCUUCUCUUAUUGUGUAAAAUCUUGAAUUUAUUUGAUUUCACAAUAGAGAGUAGCGUGGUGAGAUUAAGUUAAUUUCAACUUGCUAAUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUAAUACUCUUUAAAAU-- A U -| UA UUGAA
ACUUAGUUU ACUAUGCU CUCUU AUUGUG AAAUC U
UGAAUUAGA UGGUGCGA GAGAG UAACAC UUUAG U
AUAAUCGUUCAACUUUAAU G U A^ -- UUUAU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | The 3' end of the 5p arm may be monouridylated. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Bpl-Mir-12602_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AUGCUUCUCUUAUUGUGUAAAAUC -24
Get sequence
|
|---|
| Mature sequence |
Bpl-Mir-12602_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UUUCACAAUAGAGAGUAGCGUGG -61
Get sequence
|
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