MirGeneDB 3.0

MirGeneDB ID

Bla-Mir-10-P9

Family name MIR-10 (all species)
Seed ACCCUGU
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bla-Mir-10-P3  Bla-Mir-10-P10 
Orthologues Adi-Mir-10  Asp-Mir-10  Bfl-Mir-10-P9  Nve-Mir-10 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Eumetazoa
Genome context
(BraLan2)
Sc0000000: 2027630-2027689 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCUGUGACCCGCCAUGUUGUUCCCCAAGAUUACCCUGUAGAUCCGGACUUGUGAUCAGUAUAACAGCACAAAUCCGAUUUACAGGUUAGGCCUGGGCAACGCCAAUCUACAAAACGGUAC
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Structure
        10          20        30        40        50          
UCUGUGACCCGCCAUGUU--|  C    AGA   C          C   C     AUCAGU 
                    GUU CCCA   UUA CCUGUAGAUC GGA UUGUG      \
                    CAA GGGU   GAU GGACAUUUAG CCU AACAC      A
CAUGGCAAAACAUCUAACCG^  C    CCG   U          -   A     GACAAU 
.       110       100        90        80         70
Deep sequencing
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CommentThe 3' end of the 5p arm appears to be monoadenylated.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Mature sequence

Bla-Mir-10-P9_5p

mirBase accessionNone
Sequence
0- UACCCUGUAGAUCCGGACUUGUG -23
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Star sequence

Bla-Mir-10-P9_3p* (predicted)

mirBase accessionNone
Sequence
38- CAAAUCCGAUUUACAGGUUAGG -60
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