MirGeneDB ID | Bla-Mir-103-P8 |
Family name |
MIR-103 (all species) |
Seed |
AGCAGCA |
Species |
European lancelet (Branchiostoma lanceolatum) |
MiRBase ID |
|
Paralogues |
Bla-Mir-103-P5
Bla-Mir-103-P6
Bla-Mir-103-P7
|
Orthologues |
Bfl-Mir-103-P8
Hmi-Mir-103
Pfl-Mir-103
Pmi-Mir-103
Sko-Mir-103
Spu-Mir-103
Sro-Mir-103
Xbo-Mir-103
|
Node of Origin (locus) |
Branchiostoma
|
Node of Origin (family) |
Bilateria
|
Genome context (BraLan2) |
Sc0000082: 843372-843431 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGGAAGCCUGAUCCCUCAUCCAUGUUUCAACUGUUGCAUCUUGCUGCCUUUAGAACCUUCCAUCCAUAAAGCAGCAGUAUGCAAUGGUGAAAAAUGGAUGCCAUGAUUCAGCUGUAGAU
Get precursor sequence
|
Structure | 10 20 30 40 50
AAGGAAGCCUGAUCCCU--| G A C CUUUAGAACCU
CAUCCAU UUUCA CUGUUGCAU UUGCUGC \
GUAGGUA AAAGU GGUAACGUA GACGACG U
UAGAUGUCGACUUAGUACC^ A - U AAAUACCUACC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Bla-Mir-103-P8_5p* |
mirBase accession | None |
Sequence |
0- ACUGUUGCAUCUUGCUGCCUUU -22
Get sequence
|
Mature sequence |
Bla-Mir-103-P8_3p |
mirBase accession | None |
Sequence |
39- AAGCAGCAGUAUGCAAUGGUG -60
Get sequence
|