Mir-103

MirGeneDB ID

Sro-Mir-103

Family name

MIR-103 (all species)

Seed

GCAGCAU

Species

Roscoff worm (Symsagittifera roscoffensis)

MiRBase ID

Paralogues

Orthologues

Aca-Mir-103-P1 Aca-Mir-103-P2 Aca-Mir-103-P4 Ami-Mir-103-P1 Ami-Mir-103-P2 Ami-Mir-103-P4 Bfl-Mir-103-P5 Bfl-Mir-103-P6 Bfl-Mir-103-P7 Bfl-Mir-103-P8 Bla-Mir-103-P5 Bla-Mir-103-P6 Bla-Mir-103-P7 Bla-Mir-103-P8 Bta-Mir-103-P1 Bta-Mir-103-P2 Bta-Mir-103-P4 Cfa-Mir-103-P1 Cfa-Mir-103-P2 Cfa-Mir-103-P4 Cja-Mir-103-P1 Cja-Mir-103-P2 Cja-Mir-103-P4 Cli-Mir-103-P1 Cli-Mir-103-P2 Cli-Mir-103-P4 Cmi-Mir-103-P1 Cmi-Mir-103-P2 Cmi-Mir-103-P4 Cpi-Mir-103-P1 Cpi-Mir-103-P2 Cpi-Mir-103-P4 Cpo-Mir-103-P1 Cpo-Mir-103-P2 Cpo-Mir-103-P4 Dno-Mir-103-P1 Dno-Mir-103-P2 Dno-Mir-103-P4 Dre-Mir-103-P1a Dre-Mir-103-P1b Dre-Mir-103-P2a Dre-Mir-103-P2b Eca-Mir-103-P1 Eca-Mir-103-P2 Eca-Mir-103-P4 Ete-Mir-103-P1 Ete-Mir-103-P2 Ete-Mir-103-P4 Gga-Mir-103-P1 Gga-Mir-103-P2 Gga-Mir-103-P4 Gja-Mir-103-P1 Gja-Mir-103-P2 Gja-Mir-103-P4 Gmo-Mir-103-P2a Gmo-Mir-103-P2b Hmi-Mir-103 Hsa-Mir-103-P1 Hsa-Mir-103-P2 Hsa-Mir-103-P4 Laf-Mir-103-P1 Laf-Mir-103-P2 Laf-Mir-103-P4 Lch-Mir-103-P1 Lch-Mir-103-P2 Lch-Mir-103-P4 Loc-Mir-103-P1 Loc-Mir-103-P2 Loc-Mir-103-P4 Mal-Mir-103-P1a Mal-Mir-103-P2a Mal-Mir-103-P2b Mdo-Mir-103-P1 Mdo-Mir-103-P2 Mdo-Mir-103-P4 Mml-Mir-103-P1 Mml-Mir-103-P2 Mml-Mir-103-P4 Mmr-Mir-103-P1 Mmr-Mir-103-P2 Mmr-Mir-103-P4 Mmu-Mir-103-P1 Mmu-Mir-103-P2 Mmu-Mir-103-P4 Mun-Mir-103-P1 Mun-Mir-103-P2 Mun-Mir-103-P4 Neu-Mir-103-P2 Neu-Mir-103-P4 Oan-Mir-103-P1 Oan-Mir-103-P2 Oan-Mir-103-P4 Ocu-Mir-103-P1 Ocu-Mir-103-P2 Ocu-Mir-103-P4 Pab-Mir-103-P1 Pab-Mir-103-P2 Pab-Mir-103-P4 Pbv-Mir-103-P1 Pbv-Mir-103-P2 Pbv-Mir-103-P4 Pfl-Mir-103 Pma-Mir-103-o1 Pma-Mir-103-o2 Pmi-Mir-103 Rno-Mir-103-P1 Rno-Mir-103-P2 Rno-Mir-103-P4 Sha-Mir-103-P1 Sha-Mir-103-P2 Sha-Mir-103-P4 Sko-Mir-103 Spt-Mir-103-P1 Spt-Mir-103-P2 Spt-Mir-103-P4 Spu-Mir-103 Sto-Mir-103-P1 Sto-Mir-103-P2 Sto-Mir-103-P4 Tgu-Mir-103-P1 Tgu-Mir-103-P2 Tgu-Mir-103-P4 Tni-Mir-103-P1a Tni-Mir-103-P2a Tni-Mir-103-P2b Xbo-Mir-103 Xla-Mir-103-P1c Xla-Mir-103-P1d Xla-Mir-103-P2c Xla-Mir-103-P2d Xla-Mir-103-P4 Xtr-Mir-103-P1 Xtr-Mir-103-P2 Xtr-Mir-103-P4

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCA_025153585.1_SymRos_1_5_genomic)

JANVAR010000238.1: 724793-724863 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCAGGUUGACCUGUUUUCUGGCCUUCGAUUCAUCAUUGCAGUAUGCUUUCAUUGAACAGACUCCCAACUGUCAAUCAAAUGCAGCAUAAUGCAGUGAUAGUUCCUCGUCAGAACGAUCAAUUAAGACCAGC

Get precursor sequence

Structure

        10           20        30        40        50        60     
GCAGGUUGACCUGUUUU---|    CUUC    C         G      UU    GAACAGACUCC 
                    CUGGC    GAUU AUCAUUGCA UAUGCU  CAUU           C
                    GACUG    UUGA UAGUGACGU AUACGA  GUAA           A
CGACCAGAAUUAACUAGCAA^    CUCC    -         A      C-    ACUAACUGUCA 
 .       120       110       100         90         80        70

Deep sequencing

Go to detailed chart

Comment

It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.

3' NTU

Motifs

Tissue expression

Po

Star sequence

Sro-Mir-103_5p*

mirBase accession

None

Sequence

0- CAUCAUUGCAGUAUGCUUUCAUU -23

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Mature sequence

Sro-Mir-103_3p

mirBase accession

None

Sequence

49- UGCAGCAUAAUGCAGUGAUAGU -71

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