| MirGeneDB ID | Lch-Mir-103-P4 |
|---|---|
| Family name | MIR-103 (all species) |
| Seed | GCAGCAU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-103-P1 Lch-Mir-103-P2 |
| Orthologues | Aca-Mir-103-P4 Ami-Mir-103-P4 Bta-Mir-103-P4 Cfa-Mir-103-P4 Cli-Mir-103-P4 Cmi-Mir-103-P4 Cpi-Mir-103-P4 Cpo-Mir-103-P4 Dno-Mir-103-P4 Ete-Mir-103-P4 Gga-Mir-103-P4 Gja-Mir-103-P4 Hsa-Mir-103-P4 Loc-Mir-103-P4 Mdo-Mir-103-P4 Mml-Mir-103-P4 Mmu-Mir-103-P4 Mun-Mir-103-P4 Oan-Mir-103-P4 Ocu-Mir-103-P4 Pbv-Mir-103-P4 Pfl-Mir-103 Pmi-Mir-103 Rno-Mir-103-P4 Sha-Mir-103-P4 Sko-Mir-103 Spt-Mir-103-P4 Spu-Mir-103 Sto-Mir-103-P4 Tgu-Mir-103-P4 Xbo-Mir-103 Xla-Mir-103-P4 Xtr-Mir-103-P4 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Deuterostomia |
| Genome context (LatCha1_add) |
JH126669.1: 1588486-1588546 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | GAAGAUCUAGAACCUUUGCUCCUUGCUUUUGGCUUCUCUACAGUGCUGCCUUGUUGCAUUAAGGUUCAAGCAGCAUUGUACAGGGCUAUGAAGGCACUGAGAGAUGUUCUGCAACACAGUCGet precursor sequence |
| Structure | 10 20 30 40 50 GAAGAUCUAGAACCUUUG-- CU --| U C C UUGCAU CUC UGCUUUU GGCU CU UACAGUGCUGC UUG \ GAG ACGGAAG UCGG GA AUGUUACGACG AAC U CUGACACAACGUCUUGUAGA UC UA^ - C - UUGGAA . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Lch-Mir-103-P4_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGCUUCUCUACAGUGCUGCCUUG -23
Get sequence
|
| Mature sequence | Lch-Mir-103-P4_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- AGCAGCAUUGUACAGGGCUAUGA -61
Get sequence
|
