MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-103-P4

Family name MIR-103 (all species)
Seed GCAGCAU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-103-P1  Lch-Mir-103-P2 
Orthologues Aca-Mir-103-P4  Ami-Mir-103-P4  Bta-Mir-103-P4  Cfa-Mir-103-P4  Cja-Mir-103-P4  Cli-Mir-103-P4  Cmi-Mir-103-P4  Cpi-Mir-103-P4  Cpo-Mir-103-P4  Dno-Mir-103-P4  Eca-Mir-103-P4  Ete-Mir-103-P4  Gga-Mir-103-P4  Gja-Mir-103-P4  Hmi-Mir-103  Hsa-Mir-103-P4  Laf-Mir-103-P4  Loc-Mir-103-P4  Mdo-Mir-103-P4  Mml-Mir-103-P4  Mmr-Mir-103-P4  Mmu-Mir-103-P4  Mun-Mir-103-P4  Neu-Mir-103-P4  Oan-Mir-103-P4  Ocu-Mir-103-P4  Pab-Mir-103-P4  Pbv-Mir-103-P4  Pfl-Mir-103  Pmi-Mir-103  Rno-Mir-103-P4  Sha-Mir-103-P4  Sko-Mir-103  Spt-Mir-103-P4  Spu-Mir-103  Sro-Mir-103  Sto-Mir-103-P4  Tgu-Mir-103-P4  Xbo-Mir-103  Xla-Mir-103-P4  Xtr-Mir-103-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)
JH126669.1: 1588486-1588546 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAAGAUCUAGAACCUUUGCUCCUUGCUUUUGGCUUCUCUACAGUGCUGCCUUGUUGCAUUAAGGUUCAAGCAGCAUUGUACAGGGCUAUGAAGGCACUGAGAGAUGUUCUGCAACACAGUC
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Structure
        10          20        30          40        50          
GAAGAUCUAGAACCUUUG--   CU       --|   U  C           C   UUGCAU 
                    CUC  UGCUUUU  GGCU CU UACAGUGCUGC UUG      \
                    GAG  ACGGAAG  UCGG GA AUGUUACGACG AAC      U
CUGACACAACGUCUUGUAGA   UC       UA^   -  C           -   UUGGAA 
 .       110       100        90         80        70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Star sequence

Lch-Mir-103-P4_5p* (predicted)

mirBase accessionNone
Sequence
0- GGCUUCUCUACAGUGCUGCCUUG -23
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Mature sequence

Lch-Mir-103-P4_3p (predicted)

mirBase accessionNone
Sequence
38- AGCAGCAUUGUACAGGGCUAUGA -61
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