Mir-103-P4

MirGeneDB ID

Cja-Mir-103-P4

Family name

MIR-103 (all species)

Seed

GCAGCAU

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-103-P1 Cja-Mir-103-P2

Orthologues

Aca-Mir-103-P4 Ami-Mir-103-P4 Bta-Mir-103-P4 Cfa-Mir-103-P4 Cli-Mir-103-P4 Cmi-Mir-103-P4 Cpi-Mir-103-P4 Cpo-Mir-103-P4 Dno-Mir-103-P4 Eca-Mir-103-P4 Ete-Mir-103-P4 Gga-Mir-103-P4 Gja-Mir-103-P4 Hmi-Mir-103 Hsa-Mir-103-P4 Laf-Mir-103-P4 Lch-Mir-103-P4 Loc-Mir-103-P4 Mdo-Mir-103-P4 Mml-Mir-103-P4 Mmr-Mir-103-P4 Mmu-Mir-103-P4 Mun-Mir-103-P4 Neu-Mir-103-P4 Oan-Mir-103-P4 Ocu-Mir-103-P4 Pab-Mir-103-P4 Pbv-Mir-103-P4 Pfl-Mir-103 Pmi-Mir-103 Rno-Mir-103-P4 Sha-Mir-103-P4 Sko-Mir-103 Spt-Mir-103-P4 Spu-Mir-103 Sro-Mir-103 Sto-Mir-103-P4 Tgu-Mir-103-P4 Xbo-Mir-103 Xla-Mir-103-P4 Xtr-Mir-103-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021916.1: 29491708-29491767 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAUGUUGCAUUUGAUUUUCUUACUGCCCUCGGCUUCUUUACAGUGCUGCCUUGUUGCAUAUGGAUCAAGCAGCAUUGUACAGGGCUAUGAAGGCAUUGAGACCUGUUCUUCAUGAUAUUU

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Structure

        10          20        30          40        50         
AAUGUUGCAUUUGAUUU--     C    C  --|   U  U           C   UUGCA 
                   UCUUA UGCC UC  GGCU CU UACAGUGCUGC UUG     U
                   AGAGU ACGG AG  UCGG GA AUGUUACGACG AAC     A
UUUAUAGUACUUCUUGUCC     U    A  UA^   -  C           -   UAGGU 
.       110       100        90         80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Cja-Mir-103-P4_5p* (predicted)

mirBase accession

None

Sequence

0- GGCUUCUUUACAGUGCUGCCUUG -23

Get sequence

Mature sequence

Cja-Mir-103-P4_3p

mirBase accession

None

Sequence

37- AGCAGCAUUGUACAGGGCUAUGA -60

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