MirGeneDB ID | Oan-Mir-103-P4 |
Family name |
MIR-103 (all species) |
Seed |
GCAGCAU |
Species |
Platypus (Ornithorhynchus anatinus) |
MiRBase ID |
oan-mir-103-1
|
Paralogues |
Oan-Mir-103-P1
Oan-Mir-103-P2
|
Orthologues |
Aca-Mir-103-P4
Ami-Mir-103-P4
Bta-Mir-103-P4
Cfa-Mir-103-P4
Cja-Mir-103-P4
Cli-Mir-103-P4
Cmi-Mir-103-P4
Cpi-Mir-103-P4
Cpo-Mir-103-P4
Dno-Mir-103-P4
Eca-Mir-103-P4
Ete-Mir-103-P4
Gga-Mir-103-P4
Gja-Mir-103-P4
Hmi-Mir-103
Hsa-Mir-103-P4
Laf-Mir-103-P4
Lch-Mir-103-P4
Loc-Mir-103-P4
Mdo-Mir-103-P4
Mml-Mir-103-P4
Mmr-Mir-103-P4
Mmu-Mir-103-P4
Mun-Mir-103-P4
Neu-Mir-103-P4
Ocu-Mir-103-P4
Pab-Mir-103-P4
Pbv-Mir-103-P4
Pfl-Mir-103
Pmi-Mir-103
Rno-Mir-103-P4
Sha-Mir-103-P4
Sko-Mir-103
Spt-Mir-103-P4
Spu-Mir-103
Sro-Mir-103
Sto-Mir-103-P4
Tgu-Mir-103-P4
Xbo-Mir-103
Xla-Mir-103-P4
Xtr-Mir-103-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (mOrnAna1.p.v1_plustraces) |
NC_041749.1: 21728165-21728224 [+]
|
Precursor (pre-Mir +30nt flank) |
UAAACAUGUGGAAGAUUGCUCCUUGCCCUCGGCUUCUUUACAGUGCUGCCUUGUUGCAUAUGGAUCAAGCAGCAUUGUACAGGGCUAUGAGGGCAUUGAGACUUUAUCUUCAAAGAAAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
UAAACAUGUGGAAGAUUG-- CU --| U U C UUGCA
CUC UGCCCUC GGCU CU UACAGUGCUGC UUG U
GAG ACGGGAG UCGG GA AUGUUACGACG AAC A
AAAAAGAAACUUCUAUUUCA UU UA^ - C - UAGGU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Oan-Mir-103-P4_5p* |
mirBase accession | MIMAT0031098 |
Sequence |
0- GGCUUCUUUACAGUGCUGCCUUG -23
Get sequence
|
Mature sequence |
Oan-Mir-103-P4_3p |
mirBase accession | MIMAT0006942 |
Sequence |
37- AGCAGCAUUGUACAGGGCUAUGA -60
Get sequence
|