MirGeneDB ID | Gja-Mir-103-P4 |
Family name |
MIR-103 (all species) |
Seed |
GCAGCAU |
Species |
Schlegels Japanese gecko (Gekko japonicus) |
MiRBase ID |
|
Paralogues |
Gja-Mir-103-P1
Gja-Mir-103-P2
|
Orthologues |
Aca-Mir-103-P4
Ami-Mir-103-P4
Bta-Mir-103-P4
Cfa-Mir-103-P4
Cja-Mir-103-P4
Cli-Mir-103-P4
Cmi-Mir-103-P4
Cpi-Mir-103-P4
Cpo-Mir-103-P4
Dno-Mir-103-P4
Eca-Mir-103-P4
Ete-Mir-103-P4
Gga-Mir-103-P4
Hmi-Mir-103
Hsa-Mir-103-P4
Laf-Mir-103-P4
Lch-Mir-103-P4
Loc-Mir-103-P4
Mdo-Mir-103-P4
Mml-Mir-103-P4
Mmr-Mir-103-P4
Mmu-Mir-103-P4
Mun-Mir-103-P4
Neu-Mir-103-P4
Oan-Mir-103-P4
Ocu-Mir-103-P4
Pab-Mir-103-P4
Pbv-Mir-103-P4
Pfl-Mir-103
Pmi-Mir-103
Rno-Mir-103-P4
Sha-Mir-103-P4
Sko-Mir-103
Spt-Mir-103-P4
Spu-Mir-103
Sro-Mir-103
Sto-Mir-103-P4
Tgu-Mir-103-P4
Xbo-Mir-103
Xla-Mir-103-P4
Xtr-Mir-103-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001447785.1_Gekko_japonicus) |
NW_015163608.1: 1590539-1590598 [-]
|
Precursor (pre-Mir +30nt flank) |
UCAUCAUCUGAAAUACUUCUCACUGUCUUUGGCUUCUUUACAGUGCUGCCUUGUUGCAUAUGGAUCAAGCAGCAUUGUACAGGGCUAUGAAGACAGUGGGUACUUCUUUGCAGUGUGUGU
Get precursor sequence
|
Structure | 10 20 30 40 50
UCAUCAUCUGAAAUACUU-- --| U U C UUGCA
CUCACUGUCUUU GGCU CU UACAGUGCUGC UUG U
GGGUGACAGAAG UCGG GA AUGUUACGACG AAC A
UGUGUGUGACGUUUCUUCAU UA^ - C - UAGGU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Gja-Mir-103-P4_5p* |
mirBase accession | None |
Sequence |
0- GGCUUCUUUACAGUGCUGCCUUG -23
Get sequence
|
Mature sequence |
Gja-Mir-103-P4_3p |
mirBase accession | None |
Sequence |
37- AGCAGCAUUGUACAGGGCUAUGA -60
Get sequence
|