MirGeneDB ID | Sto-Mir-103-P4 |
Family name |
MIR-103 (all species) |
Seed |
GCAGCAU |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-103-P1
Sto-Mir-103-P2
|
Orthologues |
Aca-Mir-103-P4
Ami-Mir-103-P4
Bta-Mir-103-P4
Cfa-Mir-103-P4
Cja-Mir-103-P4
Cli-Mir-103-P4
Cmi-Mir-103-P4
Cpi-Mir-103-P4
Cpo-Mir-103-P4
Dno-Mir-103-P4
Eca-Mir-103-P4
Ete-Mir-103-P4
Gga-Mir-103-P4
Gja-Mir-103-P4
Hmi-Mir-103
Hsa-Mir-103-P4
Laf-Mir-103-P4
Lch-Mir-103-P4
Loc-Mir-103-P4
Mdo-Mir-103-P4
Mml-Mir-103-P4
Mmr-Mir-103-P4
Mmu-Mir-103-P4
Mun-Mir-103-P4
Neu-Mir-103-P4
Oan-Mir-103-P4
Ocu-Mir-103-P4
Pab-Mir-103-P4
Pbv-Mir-103-P4
Pfl-Mir-103
Pmi-Mir-103
Rno-Mir-103-P4
Sha-Mir-103-P4
Sko-Mir-103
Spt-Mir-103-P4
Spu-Mir-103
Sro-Mir-103
Tgu-Mir-103-P4
Xbo-Mir-103
Xla-Mir-103-P4
Xtr-Mir-103-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_003427355_STO_add) |
BFAA01001934.1: 384944-385003 [+]
|
Precursor (pre-Mir +30nt flank) |
AUGAAAGAACUUGAAAUUCUCUGUACUUUCGGCUUCUUUACAGUGCUGCCUUGUGACGUGAAGAUCAAGCAGCAUUGUACAGGGCUAUGAAAGCUCAGAGACUUCACAUCAUUGAACAAU
Get precursor sequence
|
Structure | 10 20 30 40 50
AUGAAAGAACUUGAAAU-- UA --| U U C UGACG
UCUCUG CUUUC GGCU CU UACAGUGCUGC UUG U
AGAGAC GAAAG UCGG GA AUGUUACGACG AAC G
UAACAAGUUACUACACUUC UC UA^ - C - UAGAA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Sto-Mir-103-P4_5p* |
mirBase accession | None |
Sequence |
0- GGCUUCUUUACAGUGCUGCCUUG -23
Get sequence
|
Mature sequence |
Sto-Mir-103-P4_3p |
mirBase accession | None |
Sequence |
37- AGCAGCAUUGUACAGGGCUAUGA -60
Get sequence
|