MirGeneDB ID | Eca-Mir-103-P4 |
Family name |
MIR-103 (all species) |
Seed |
GCAGCAU |
Species |
Horse (Equus caballus) |
MiRBase ID |
eca-mir-107a
|
Paralogues |
Eca-Mir-103-P1
Eca-Mir-103-P2
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Orthologues |
Aca-Mir-103-P4
Ami-Mir-103-P4
Bta-Mir-103-P4
Cfa-Mir-103-P4
Cja-Mir-103-P4
Cli-Mir-103-P4
Cmi-Mir-103-P4
Cpi-Mir-103-P4
Cpo-Mir-103-P4
Dno-Mir-103-P4
Ete-Mir-103-P4
Gga-Mir-103-P4
Gja-Mir-103-P4
Hmi-Mir-103
Hsa-Mir-103-P4
Laf-Mir-103-P4
Lch-Mir-103-P4
Loc-Mir-103-P4
Mdo-Mir-103-P4
Mml-Mir-103-P4
Mmr-Mir-103-P4
Mmu-Mir-103-P4
Mun-Mir-103-P4
Neu-Mir-103-P4
Oan-Mir-103-P4
Ocu-Mir-103-P4
Pab-Mir-103-P4
Pbv-Mir-103-P4
Pfl-Mir-103
Pmi-Mir-103
Rno-Mir-103-P4
Sha-Mir-103-P4
Sko-Mir-103
Spt-Mir-103-P4
Spu-Mir-103
Sro-Mir-103
Sto-Mir-103-P4
Tgu-Mir-103-P4
Xbo-Mir-103
Xla-Mir-103-P4
Xtr-Mir-103-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
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Genome context (GCA_002863925.1_EquCab3.0) |
CM009161.1: 11601952-11602011 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGAGUCCUUGGAGGUUUCCUCACUGCCCUCGGCUUCUUUACAGUGCUGCCUUGUUGCGGAUGGAUCAAGCAGCAUUGUACAGGGCUAUGAAGGCGUUGAGACUUGUUCUUCACUUGAAGU
Get precursor sequence
|
Structure | 10 20 30 40 50
GGAGUCCUUGGAGGUUUC-- C C --| U U C UUGCG
CUCA UGCC UC GGCU CU UACAGUGCUGC UUG G
GAGU GCGG AG UCGG GA AUGUUACGACG AAC A
UGAAGUUCACUUCUUGUUCA U A UA^ - C - UAGGU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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Star sequence |
Eca-Mir-103-P4_5p* |
mirBase accession | None |
Sequence |
0- GGCUUCUUUACAGUGCUGCCUUGU -24
Get sequence
|
Mature sequence |
Eca-Mir-103-P4_3p |
mirBase accession | MIMAT0013061 |
Sequence |
37- AGCAGCAUUGUACAGGGCUAUGA -60
Get sequence
|