Mir-103-P4

MirGeneDB ID

Xla-Mir-103-P4

Family name

MIR-103 (all species)

Seed

GCAGCAU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-103a

Paralogues

Xla-Mir-103-P1c Xla-Mir-103-P1d Xla-Mir-103-P2c Xla-Mir-103-P2d

Orthologues

Aca-Mir-103-P4 Ami-Mir-103-P4 Bta-Mir-103-P4 Cfa-Mir-103-P4 Cja-Mir-103-P4 Cli-Mir-103-P4 Cmi-Mir-103-P4 Cpi-Mir-103-P4 Cpo-Mir-103-P4 Dno-Mir-103-P4 Eca-Mir-103-P4 Ete-Mir-103-P4 Gga-Mir-103-P4 Gja-Mir-103-P4 Hmi-Mir-103 Hsa-Mir-103-P4 Laf-Mir-103-P4 Lch-Mir-103-P4 Loc-Mir-103-P4 Mdo-Mir-103-P4 Mml-Mir-103-P4 Mmr-Mir-103-P4 Mmu-Mir-103-P4 Mun-Mir-103-P4 Neu-Mir-103-P4 Oan-Mir-103-P4 Ocu-Mir-103-P4 Pab-Mir-103-P4 Pbv-Mir-103-P4 Pfl-Mir-103 Pmi-Mir-103 Rno-Mir-103-P4 Sha-Mir-103-P4 Sko-Mir-103 Spt-Mir-103-P4 Spu-Mir-103 Sro-Mir-103 Sto-Mir-103-P4 Tgu-Mir-103-P4 Xbo-Mir-103 Xtr-Mir-103-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030729.1: 111898598-111898657 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGAAGUGCAUGAAUAUUCUCAUUUCGUUCGGCUUCUUUACAGUGCUGCCUUGUUGCAUAUGGAUCAAGCAGCAUUGUACAGGGCUAUGAAGGAUCUGAGGAAAAACAUCACCUGAAGAG

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Structure

        10          20        30          40        50         
AAGAAGUGCAUGAAUAU--     UU  G   --|   U  U           C   UUGCA 
                   UCUCA  UC UUC  GGCU CU UACAGUGCUGC UUG     U
                   GGAGU  AG AAG  UCGG GA AUGUUACGACG AAC     A
GAGAAGUCCACUACAAAAA     CU  G   UA^   -  C           -   UAGGU 
.       110       100        90         80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Star sequence

Xla-Mir-103-P4_5p*

mirBase accession

MIMAT0046414

Sequence

0- GGCUUCUUUACAGUGCUGCCUUG -23

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Mature sequence

Xla-Mir-103-P4_3p

mirBase accession

MIMAT0046415

Sequence

37- AGCAGCAUUGUACAGGGCUAUGA -60

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