Mir-103-P1d

MirGeneDB ID

Xla-Mir-103-P1d

Family name

MIR-103 (all species)

Seed

GCAGCAU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-107

Paralogues

Xla-Mir-103-P1c Xla-Mir-103-P2c Xla-Mir-103-P2d Xla-Mir-103-P4

Orthologues

Aca-Mir-103-P1 Ami-Mir-103-P1 Bta-Mir-103-P1 Cfa-Mir-103-P1 Cja-Mir-103-P1 Cli-Mir-103-P1 Cmi-Mir-103-P1 Cpi-Mir-103-P1 Cpo-Mir-103-P1 Dno-Mir-103-P1 Eca-Mir-103-P1 Ete-Mir-103-P1 Gga-Mir-103-P1 Gja-Mir-103-P1 Hmi-Mir-103 Hsa-Mir-103-P1 Laf-Mir-103-P1 Lch-Mir-103-P1 Loc-Mir-103-P1 Mdo-Mir-103-P1 Mml-Mir-103-P1 Mmr-Mir-103-P1 Mmu-Mir-103-P1 Mun-Mir-103-P1 Oan-Mir-103-P1 Ocu-Mir-103-P1 Pab-Mir-103-P1 Pbv-Mir-103-P1 Pfl-Mir-103 Pma-Mir-103-o1 Pmi-Mir-103 Rno-Mir-103-P1 Sha-Mir-103-P1 Sko-Mir-103 Spt-Mir-103-P1 Spu-Mir-103 Sro-Mir-103 Sto-Mir-103-P1 Tgu-Mir-103-P1 Xbo-Mir-103 Xtr-Mir-103-P1

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030737.1: 24751990-24752049 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUCCAUUUGAGAUGUAAUCUUUUUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUGGCAUGGAGUUCAAGCAGCAUUGUACAGGGCUAUCAAAGCAUUAAGAACUGCAACAUGAUCCACUG

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Structure

        10          20        30          40        50         
GUCCAUUUGAGAUGUAA--    UU      C--|   U  U           C   UGGCA 
                   UCUU  UGCUUU   AGCU CU UACAGUGUUGC UUG     U
                   AGAA  ACGAAA   UCGG GA AUGUUACGACG AAC     G
GUCACCUAGUACAACGUCA    UU      CUA^   -  C           -   UUGAG 
.       110       100        90         80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Star sequence

Xla-Mir-103-P1d_5p*

mirBase accession

MIMAT0046420

Sequence

0- AGCUUCUUUACAGUGUUGCCUUG -23

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Mature sequence

Xla-Mir-103-P1d_3p

mirBase accession

MIMAT0046421

Sequence

37- AGCAGCAUUGUACAGGGCUAUCA -60

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