Mir-103-P1

MirGeneDB ID

Gga-Mir-103-P1

Family name

MIR-103 (all species)

Seed

GCAGCAU

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-107

Paralogues

Gga-Mir-103-P2 Gga-Mir-103-P4

Orthologues

Aca-Mir-103-P1 Ami-Mir-103-P1 Bta-Mir-103-P1 Cfa-Mir-103-P1 Cja-Mir-103-P1 Cli-Mir-103-P1 Cmi-Mir-103-P1 Cpi-Mir-103-P1 Cpo-Mir-103-P1 Dno-Mir-103-P1 Dre-Mir-103-P1a Dre-Mir-103-P1b Eca-Mir-103-P1 Ete-Mir-103-P1 Gja-Mir-103-P1 Hmi-Mir-103 Hsa-Mir-103-P1 Laf-Mir-103-P1 Lch-Mir-103-P1 Loc-Mir-103-P1 Mal-Mir-103-P1a Mdo-Mir-103-P1 Mml-Mir-103-P1 Mmr-Mir-103-P1 Mmu-Mir-103-P1 Mun-Mir-103-P1 Oan-Mir-103-P1 Ocu-Mir-103-P1 Pab-Mir-103-P1 Pbv-Mir-103-P1 Pfl-Mir-103 Pma-Mir-103-o1 Pmi-Mir-103 Rno-Mir-103-P1 Sha-Mir-103-P1 Sko-Mir-103 Spt-Mir-103-P1 Spu-Mir-103 Sro-Mir-103 Sto-Mir-103-P1 Tgu-Mir-103-P1 Tni-Mir-103-P1a Xbo-Mir-103 Xla-Mir-103-P1c Xla-Mir-103-P1d Xtr-Mir-103-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

6: 20232380-20232439 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAUUCUCUUUCAAGUCUUCUCUUUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUGGCAUGGAGUUCAAGCAGCAUUGUACAGGGCUAUCAAAGCAUGGAGAGUUGCAGCAGGGAACAACG

Get precursor sequence

Structure

        10          20        30          40        50         
GAUUCUCUUUCAAGUCU--     U      C--|   U  U           C   UGGCA 
                   UCUCU UGCUUU   AGCU CU UACAGUGUUGC UUG     U
                   AGAGG ACGAAA   UCGG GA AUGUUACGACG AAC     G
GCAACAAGGGACGACGUUG     U      CUA^   -  C           -   UUGAG 
.       110       100        90         80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-103-P1_5p*

mirBase accession

MIMAT0026520

Sequence

0- AGCUUCUUUACAGUGUUGCCUUG -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-107-5p
miRDB: MIMAT0026520

Mature sequence

Gga-Mir-103-P1_3p

mirBase accession

MIMAT0001147

Sequence

37- AGCAGCAUUGUACAGGGCUAUCA -60

Get sequence

Proposed targets

TargetScanVert: gga-miR-107-3p
miRDB: MIMAT0001147