MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-103-P1

Family name MIR-103 (all species)
Seed GCAGCAU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-107
Paralogues Rno-Mir-103-P2  Rno-Mir-103-P4 
Orthologues Aca-Mir-103-P1  Ami-Mir-103-P1  Bta-Mir-103-P1  Cfa-Mir-103-P1  Cli-Mir-103-P1  Cmi-Mir-103-P1  Cpi-Mir-103-P1  Cpo-Mir-103-P1  Dno-Mir-103-P1  Dre-Mir-103-P1a  Dre-Mir-103-P1b  Ete-Mir-103-P1  Gga-Mir-103-P1  Gja-Mir-103-P1  Hsa-Mir-103-P1  Lch-Mir-103-P1  Loc-Mir-103-P1  Mal-Mir-103-P1a  Mdo-Mir-103-P1  Mml-Mir-103-P1  Mmu-Mir-103-P1  Mun-Mir-103-P1  Oan-Mir-103-P1  Ocu-Mir-103-P1  Pbv-Mir-103-P1  Pfl-Mir-103  Pma-Mir-103-o1  Pmi-Mir-103  Sha-Mir-103-P1  Sko-Mir-103  Spt-Mir-103-P1  Spu-Mir-103  Sto-Mir-103-P1  Tgu-Mir-103-P1  Tni-Mir-103-P1a  Xbo-Mir-103  Xla-Mir-103-P1c  Xla-Mir-103-P1d  Xtr-Mir-103-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Deuterostomia
Genome context
(rn6)
chr1: 253128263-253128322 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACAAUACUGUGAUAUUCUCUCUGCUUUAAGCUUCUUUACAGUGUUGCCUUGUGGCAUGGAGUUCAAGCAGCAUUGUACAGGGCUAUCAAAGCACAGAGAGCUUGCUACAGCCAAAGCC
Get precursor sequence
Structure
        10          20        30          40        50         
CCACAAUACUGUGAUAU--     C      A--|   U  U           C   UGGCA 
                   UCUCU UGCUUU   AGCU CU UACAGUGUUGC UUG     U
                   AGAGA ACGAAA   UCGG GA AUGUUACGACG AAC     G
CCGAAACCGACAUCGUUCG     C      CUA^   -  C           -   UUGAG 
.       110       100        90         80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Rno-Mir-103-P1_5p*

mirBase accessionMIMAT0017115
Sequence
0- AGCUUCUUUACAGUGUUGCCUUG -23
Get sequence
Proposed targets TargetScanVert: rno-miR-107-5p
miRDB: MIMAT0017115
Mature sequence

Rno-Mir-103-P1_3p

mirBase accessionMIMAT0000826
Sequence
37- AGCAGCAUUGUACAGGGCUAUCA -60
Get sequence
Proposed targets microrna.org: MIMAT0000826
TargetScanVert: rno-miR-107-3p
miRDB: MIMAT0000826