Mir-103-P1

MirGeneDB ID

Rno-Mir-103-P1

Family name

MIR-103 (all species)

Seed

GCAGCAU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-107

Paralogues

Rno-Mir-103-P2 Rno-Mir-103-P4

Orthologues

Aca-Mir-103-P1 Ami-Mir-103-P1 Bta-Mir-103-P1 Cfa-Mir-103-P1 Cja-Mir-103-P1 Cli-Mir-103-P1 Cmi-Mir-103-P1 Cpi-Mir-103-P1 Cpo-Mir-103-P1 Dno-Mir-103-P1 Dre-Mir-103-P1a Dre-Mir-103-P1b Eca-Mir-103-P1 Ete-Mir-103-P1 Gga-Mir-103-P1 Gja-Mir-103-P1 Hmi-Mir-103 Hsa-Mir-103-P1 Laf-Mir-103-P1 Lch-Mir-103-P1 Loc-Mir-103-P1 Mal-Mir-103-P1a Mdo-Mir-103-P1 Mml-Mir-103-P1 Mmr-Mir-103-P1 Mmu-Mir-103-P1 Mun-Mir-103-P1 Oan-Mir-103-P1 Ocu-Mir-103-P1 Pab-Mir-103-P1 Pbv-Mir-103-P1 Pfl-Mir-103 Pma-Mir-103-o1 Pmi-Mir-103 Sha-Mir-103-P1 Sko-Mir-103 Spt-Mir-103-P1 Spu-Mir-103 Sro-Mir-103 Sto-Mir-103-P1 Tgu-Mir-103-P1 Tni-Mir-103-P1a Xbo-Mir-103 Xla-Mir-103-P1c Xla-Mir-103-P1d Xtr-Mir-103-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr1: 253128263-253128322 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACAAUACUGUGAUAUUCUCUCUGCUUUAAGCUUCUUUACAGUGUUGCCUUGUGGCAUGGAGUUCAAGCAGCAUUGUACAGGGCUAUCAAAGCACAGAGAGCUUGCUACAGCCAAAGCC

Get precursor sequence

Structure

        10          20        30          40        50         
CCACAAUACUGUGAUAU--     C      A--|   U  U           C   UGGCA 
                   UCUCU UGCUUU   AGCU CU UACAGUGUUGC UUG     U
                   AGAGA ACGAAA   UCGG GA AUGUUACGACG AAC     G
CCGAAACCGACAUCGUUCG     C      CUA^   -  C           -   UUGAG 
.       110       100        90         80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-103-P1_5p*

mirBase accession

MIMAT0017115

Sequence

0- AGCUUCUUUACAGUGUUGCCUUG -23

Get sequence

Proposed targets

TargetScanVert: rno-miR-107-5p
miRDB: MIMAT0017115

Mature sequence

Rno-Mir-103-P1_3p

mirBase accession

MIMAT0000826

Sequence

37- AGCAGCAUUGUACAGGGCUAUCA -60

Get sequence

Proposed targets

microrna.org: MIMAT0000826
TargetScanVert: rno-miR-107-3p
miRDB: MIMAT0000826