Mir-103-P1

MirGeneDB ID

Cmi-Mir-103-P1

Family name

MIR-103 (all species)

Seed

GCAGCAU

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-103-P2 Cmi-Mir-103-P4

Orthologues

Aca-Mir-103-P1 Ami-Mir-103-P1 Bta-Mir-103-P1 Cfa-Mir-103-P1 Cja-Mir-103-P1 Cli-Mir-103-P1 Cpi-Mir-103-P1 Cpo-Mir-103-P1 Dno-Mir-103-P1 Dre-Mir-103-P1a Dre-Mir-103-P1b Eca-Mir-103-P1 Ete-Mir-103-P1 Gga-Mir-103-P1 Gja-Mir-103-P1 Hmi-Mir-103 Hsa-Mir-103-P1 Laf-Mir-103-P1 Lch-Mir-103-P1 Loc-Mir-103-P1 Mal-Mir-103-P1a Mdo-Mir-103-P1 Mml-Mir-103-P1 Mmr-Mir-103-P1 Mmu-Mir-103-P1 Mun-Mir-103-P1 Oan-Mir-103-P1 Ocu-Mir-103-P1 Pab-Mir-103-P1 Pbv-Mir-103-P1 Pfl-Mir-103 Pma-Mir-103-o1 Pmi-Mir-103 Rno-Mir-103-P1 Sha-Mir-103-P1 Sko-Mir-103 Spt-Mir-103-P1 Spu-Mir-103 Sro-Mir-103 Sto-Mir-103-P1 Tgu-Mir-103-P1 Tni-Mir-103-P1a Xbo-Mir-103 Xla-Mir-103-P1c Xla-Mir-103-P1d Xtr-Mir-103-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635857.1: 4271538-4271597 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAUCAAUCUUAAGACGUUCUCUGUGAUUUGGGCUUCUUUACAGUGUUGCCUUGUAGCUUGGAGAUCAAGCAGCAUUGUACAGGGCUAUCAAAGCGCAGCGACUAGCAACUCGGACUCAGU

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Structure

        10          20        30          40        50         
GAUCAAUCUUAAGACGU--  U     A    --|   U  U           C   UAGCU 
                   UC CUGUG UUUG  GGCU CU UACAGUGUUGC UUG     U
                   AG GACGC AAAC  UCGG GA AUGUUACGACG AAC     G
UGACUCAGGCUCAACGAUC  C     G    UA^   -  C           -   UAGAG 
.       110       100        90         80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-103-P1_5p* (predicted)

mirBase accession

None

Sequence

0- GGCUUCUUUACAGUGUUGCCUUG -23

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Mature sequence

Cmi-Mir-103-P1_3p

mirBase accession

None

Sequence

37- AGCAGCAUUGUACAGGGCUAUCA -60

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