MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-103-o1

Family name MIR-103 (all species)
Seed GCAGCAU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-103a
Paralogues Pma-Mir-103-o2 
Orthologues Aca-Mir-103-P1  Ami-Mir-103-P1  Bta-Mir-103-P1  Cfa-Mir-103-P1  Cja-Mir-103-P1  Cli-Mir-103-P1  Cmi-Mir-103-P1  Cpi-Mir-103-P1  Cpo-Mir-103-P1  Dno-Mir-103-P1  Dre-Mir-103-P1a  Dre-Mir-103-P1b  Eca-Mir-103-P1  Ete-Mir-103-P1  Gga-Mir-103-P1  Gja-Mir-103-P1  Hmi-Mir-103  Hsa-Mir-103-P1  Laf-Mir-103-P1  Lch-Mir-103-P1  Loc-Mir-103-P1  Mal-Mir-103-P1a  Mdo-Mir-103-P1  Mml-Mir-103-P1  Mmr-Mir-103-P1  Mmu-Mir-103-P1  Mun-Mir-103-P1  Oan-Mir-103-P1  Ocu-Mir-103-P1  Pab-Mir-103-P1  Pbv-Mir-103-P1  Pfl-Mir-103  Pmi-Mir-103  Rno-Mir-103-P1  Sha-Mir-103-P1  Sko-Mir-103  Spt-Mir-103-P1  Spu-Mir-103  Sro-Mir-103  Sto-Mir-103-P1  Tgu-Mir-103-P1  Tni-Mir-103-P1a  Xbo-Mir-103  Xla-Mir-103-P1c  Xla-Mir-103-P1d  Xtr-Mir-103-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046077.1: 13031137-13031200 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGCUACUUGCUUCCUUCCCCGCUCCUUUCAGCCUCUCUAUGGUGCUGCCUUGUGUCAAACCUGCGUGUCAAGCAGCAUCGUACAGGGCUUGGAAAGUGUCGGGGGCCUGCAGCUUGGGCAGUG
Get precursor sequence
Structure
        10          20        30          40        50        60 
GUGCUACUUGCUUCCUU--     CUC     --|   U  C           C   UGUCAAA 
                   CCCCG   CUUUC  AGCC CU UAUGGUGCUGC UUG       C
                   GGGGC   GAAAG  UCGG GA AUGCUACGACG AAC       C
GUGACGGGUUCGACGUCCG     UGU     GU^   -  C           -   UGUGCGU 
  120       110       100        90         80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-103-o1_5p*
mirBase accessionNone
Sequence 
0- AGCCUCUCUAUGGUGCUGCCUUG -23
Get sequence
Mature sequence

Pma-Mir-103-o1_3p
mirBase accessionMIMAT0019441
Sequence 
41- AGCAGCAUCGUACAGGGCUUGGA -64
Get sequence