Mir-103-o2

MirGeneDB ID

Pma-Mir-103-o2

Family name

MIR-103 (all species)

Seed

GCAGCAU

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-103b

Paralogues

Pma-Mir-103-o1

Orthologues

Aca-Mir-103-P2 Ami-Mir-103-P2 Bta-Mir-103-P2 Cfa-Mir-103-P2 Cja-Mir-103-P2 Cli-Mir-103-P2 Cmi-Mir-103-P2 Cpi-Mir-103-P2 Cpo-Mir-103-P2 Dno-Mir-103-P2 Dre-Mir-103-P2a Dre-Mir-103-P2b Eca-Mir-103-P2 Ete-Mir-103-P2 Gga-Mir-103-P2 Gja-Mir-103-P2 Gmo-Mir-103-P2a Gmo-Mir-103-P2b Hmi-Mir-103 Hsa-Mir-103-P2 Laf-Mir-103-P2 Lch-Mir-103-P2 Loc-Mir-103-P2 Mal-Mir-103-P2a Mal-Mir-103-P2b Mdo-Mir-103-P2 Mml-Mir-103-P2 Mmr-Mir-103-P2 Mmu-Mir-103-P2 Mun-Mir-103-P2 Neu-Mir-103-P2 Oan-Mir-103-P2 Ocu-Mir-103-P2 Pab-Mir-103-P2 Pbv-Mir-103-P2 Pfl-Mir-103 Pmi-Mir-103 Rno-Mir-103-P2 Sha-Mir-103-P2 Sko-Mir-103 Spt-Mir-103-P2 Spu-Mir-103 Sro-Mir-103 Sto-Mir-103-P2 Tgu-Mir-103-P2 Tni-Mir-103-P2a Tni-Mir-103-P2b Xbo-Mir-103 Xla-Mir-103-P2c Xla-Mir-103-P2d Xtr-Mir-103-P2

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046097.1: 13332364-13332421 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGUUAACUGGGCAGUUUACCCUGUUCUCUCGGCCUCUUUACAGUGCUAUCUUGUAGCCUCAAUCAAGCAGCAUUGUACAGGGCUAUGAGAGAGCAAGGACAGCUCUUCAAAUCAUUAA

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Structure

        10          20        30          40        50        
AGUUAACUGGGCAGUUUA--  C         --|   U  U         AU    UAGC 
                    CC UGUUCUCUC  GGCC CU UACAGUGCU  CUUG    C
                    GG ACGAGAGAG  UCGG GA AUGUUACGA  GAAC    U
AAUUACUAAACUUCUCGACA  A         UA^   -  C         C-    UAAC 
      110       100        90         80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-103-o2_5p*

mirBase accession

MIMAT0019442

Sequence

0- GGCCUCUUUACAGUGCUAUCUUG -23

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Mature sequence

Pma-Mir-103-o2_3p

mirBase accession

MIMAT0019443

Sequence

35- AGCAGCAUUGUACAGGGCUAUGA -58

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