Mir-103-P2b

MirGeneDB ID

Tni-Mir-103-P2b

Family name

MIR-103 (all species)

Seed

GCAGCAU

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-103

Paralogues

Tni-Mir-103-P1a Tni-Mir-103-P2a

Orthologues

Aca-Mir-103-P2 Ami-Mir-103-P2 Bta-Mir-103-P2 Cfa-Mir-103-P2 Cja-Mir-103-P2 Cli-Mir-103-P2 Cmi-Mir-103-P2 Cpi-Mir-103-P2 Cpo-Mir-103-P2 Dno-Mir-103-P2 Dre-Mir-103-P2b Eca-Mir-103-P2 Ete-Mir-103-P2 Gga-Mir-103-P2 Gja-Mir-103-P2 Gmo-Mir-103-P2b Hmi-Mir-103 Hsa-Mir-103-P2 Laf-Mir-103-P2 Lch-Mir-103-P2 Loc-Mir-103-P2 Mal-Mir-103-P2b Mdo-Mir-103-P2 Mml-Mir-103-P2 Mmr-Mir-103-P2 Mmu-Mir-103-P2 Mun-Mir-103-P2 Neu-Mir-103-P2 Oan-Mir-103-P2 Ocu-Mir-103-P2 Pab-Mir-103-P2 Pbv-Mir-103-P2 Pfl-Mir-103 Pma-Mir-103-o2 Pmi-Mir-103 Rno-Mir-103-P2 Sha-Mir-103-P2 Sko-Mir-103 Spt-Mir-103-P2 Spu-Mir-103 Sro-Mir-103 Sto-Mir-103-P2 Tgu-Mir-103-P2 Xbo-Mir-103 Xtr-Mir-103-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

1: 5372738-5372798 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUCGCCAUCGCCACCUUGCUCUACGCUUUUAGCCUCUUUACAGUGCUGCCUUGCUCUACUCAUGUUCAAGCAGCAUUGUACAGGGCUAUGACAGCGUAGAGAGCCGAGCAGCGCUUCUCUG

Get precursor sequence

Structure

        10          20          30        40        50          
UUCGCCAUCGCCACCUUG--         UU--|    U  U           C   CUCUAC 
                    CUCUACGCU    UAGCC CU UACAGUGCUGC UUG      \
                    GAGAUGCGA    AUCGG GA AUGUUACGACG AAC      U
GUCUCUUCGCGACGAGCCGA         CAGU^    -  C           -   UUGUAC 
 .       110       100        90         80        70

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha site -1 on the 5p arm.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-103-P2b_5p*

mirBase accession

None

Sequence

0- AGCCUCUUUACAGUGCUGCCUUG -23

Get sequence

Mature sequence

Tni-Mir-103-P2b_3p

mirBase accession

MIMAT0003042

Sequence

38- AGCAGCAUUGUACAGGGCUAUGA -61

Get sequence