Mir-103-P2

MirGeneDB ID

Gja-Mir-103-P2

Family name

MIR-103 (all species)

Seed

GCAGCAU

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-103-P1 Gja-Mir-103-P4

Orthologues

Aca-Mir-103-P2 Ami-Mir-103-P2 Bta-Mir-103-P2 Cfa-Mir-103-P2 Cja-Mir-103-P2 Cli-Mir-103-P2 Cmi-Mir-103-P2 Cpi-Mir-103-P2 Cpo-Mir-103-P2 Dno-Mir-103-P2 Dre-Mir-103-P2a Dre-Mir-103-P2b Eca-Mir-103-P2 Ete-Mir-103-P2 Gga-Mir-103-P2 Gmo-Mir-103-P2a Gmo-Mir-103-P2b Hmi-Mir-103 Hsa-Mir-103-P2 Laf-Mir-103-P2 Lch-Mir-103-P2 Loc-Mir-103-P2 Mal-Mir-103-P2a Mal-Mir-103-P2b Mdo-Mir-103-P2 Mml-Mir-103-P2 Mmr-Mir-103-P2 Mmu-Mir-103-P2 Mun-Mir-103-P2 Neu-Mir-103-P2 Oan-Mir-103-P2 Ocu-Mir-103-P2 Pab-Mir-103-P2 Pbv-Mir-103-P2 Pfl-Mir-103 Pma-Mir-103-o2 Pmi-Mir-103 Rno-Mir-103-P2 Sha-Mir-103-P2 Sko-Mir-103 Spt-Mir-103-P2 Spu-Mir-103 Sro-Mir-103 Sto-Mir-103-P2 Tgu-Mir-103-P2 Tni-Mir-103-P2a Tni-Mir-103-P2b Xbo-Mir-103 Xla-Mir-103-P2c Xla-Mir-103-P2d Xtr-Mir-103-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015171560.1: 17332-17391 [-]

Precursor
(pre-Mir +30nt flank)

GCGGGGGCGUCUCUUGAACUCGGUGCCCUCAGCUUCUUUACAGUGCUGCCUUGUUGCAAGCAAGUCAAGCAGCAUUGUACAGGGCUAUGAAGGCACCGAGGCCUGCUCGGCUUGUUUGUU

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Structure

        10          20        30          40        50         
GCGGGGGCGUCUCUUGAA--         C  --|   U  U           C   UUGCA 
                    CUCGGUGCC UC  AGCU CU UACAGUGCUGC UUG     A
                    GAGCCACGG AG  UCGG GA AUGUUACGACG AAC     G
UUGUUUGUUCGGCUCGUCCG         A  UA^   -  C           -   UGAAC 
.       110       100        90         80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Gja-Mir-103-P2_5p*

mirBase accession

None

Sequence

0- AGCUUCUUUACAGUGCUGCCUUG -23

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Mature sequence

Gja-Mir-103-P2_3p

mirBase accession

None

Sequence

37- AGCAGCAUUGUACAGGGCUAUGA -60

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