Mir-103-P2c

MirGeneDB ID

Xla-Mir-103-P2c

Family name

MIR-103 (all species)

Seed

GCAGCAU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-103b

Paralogues

Xla-Mir-103-P1c Xla-Mir-103-P1d Xla-Mir-103-P2d Xla-Mir-103-P4

Orthologues

Aca-Mir-103-P2 Ami-Mir-103-P2 Bta-Mir-103-P2 Cfa-Mir-103-P2 Cja-Mir-103-P2 Cli-Mir-103-P2 Cmi-Mir-103-P2 Cpi-Mir-103-P2 Cpo-Mir-103-P2 Dno-Mir-103-P2 Eca-Mir-103-P2 Ete-Mir-103-P2 Gga-Mir-103-P2 Gja-Mir-103-P2 Hmi-Mir-103 Hsa-Mir-103-P2 Laf-Mir-103-P2 Lch-Mir-103-P2 Loc-Mir-103-P2 Mdo-Mir-103-P2 Mml-Mir-103-P2 Mmr-Mir-103-P2 Mmu-Mir-103-P2 Mun-Mir-103-P2 Neu-Mir-103-P2 Oan-Mir-103-P2 Ocu-Mir-103-P2 Pab-Mir-103-P2 Pbv-Mir-103-P2 Pfl-Mir-103 Pma-Mir-103-o2 Pmi-Mir-103 Rno-Mir-103-P2 Sha-Mir-103-P2 Sko-Mir-103 Spt-Mir-103-P2 Spu-Mir-103 Sro-Mir-103 Sto-Mir-103-P2 Tgu-Mir-103-P2 Xbo-Mir-103 Xtr-Mir-103-P2

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030724.1: 3027962-3028021 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAAAUGGAGUGAAUUGUGCUCUGUGCUUUCAGCUUCUUUACGGUGCUGCCUUGUAUCAUGUAUGUCAAGCAGCAUUGUACAGGGCUAUGAAGGAGCAGAGAUCUGUUCGUCUCUUCCUCU

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Structure

        10          20        30          40        50         
AAAAUGGAGUGAAUUGUG--      G     --|   U  U           C   UAUCA 
                    CUCUGU CUUUC  AGCU CU UACGGUGCUGC UUG     U
                    GAGACG GGAAG  UCGG GA AUGUUACGACG AAC     G
UCUCCUUCUCUGCUUGUCUA      A     UA^   -  C           -   UGUAU 
.       110       100        90         80        70         60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Em

Star sequence

Xla-Mir-103-P2c_5p*

mirBase accession

MIMAT0046416

Sequence

0- AGCUUCUUUACGGUGCUGCCUUG -23

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Mature sequence

Xla-Mir-103-P2c_3p

mirBase accession

MIMAT0046417

Sequence

37- AGCAGCAUUGUACAGGGCUAUGA -60

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