Mir-103-P2d

MirGeneDB ID

Xla-Mir-103-P2d

Family name

MIR-103 (all species)

Seed

GCAGCAU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-103-P1c Xla-Mir-103-P1d Xla-Mir-103-P2c Xla-Mir-103-P4

Orthologues

Aca-Mir-103-P2 Ami-Mir-103-P2 Bta-Mir-103-P2 Cfa-Mir-103-P2 Cli-Mir-103-P2 Cmi-Mir-103-P2 Cpi-Mir-103-P2 Cpo-Mir-103-P2 Dno-Mir-103-P2 Ete-Mir-103-P2 Gga-Mir-103-P2 Gja-Mir-103-P2 Hsa-Mir-103-P2 Lch-Mir-103-P2 Loc-Mir-103-P2 Mdo-Mir-103-P2 Mml-Mir-103-P2 Mmu-Mir-103-P2 Mun-Mir-103-P2 Oan-Mir-103-P2 Ocu-Mir-103-P2 Pbv-Mir-103-P2 Pfl-Mir-103 Pma-Mir-103-o2 Pmi-Mir-103 Rno-Mir-103-P2 Sha-Mir-103-P2 Sko-Mir-103 Spt-Mir-103-P2 Spu-Mir-103 Sto-Mir-103-P2 Tgu-Mir-103-P2 Xbo-Mir-103 Xtr-Mir-103-P2

Node of Origin (locus)

X. laevis

Node of Origin (family)

Deuterostomia

Genome context
(GCF_001663975.1_XLA_v2)

NC_030725.1: 6585289-6585348 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUAGUGCUGGUAAUUGUGCUCUGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUAUCAUCUAUGUCAAGCAGCAUUGUACAGGGCUAUGAUGGAACAGAGAUCUAGUCGUCUUCUCCUCA

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Structure

        10          20        30          40        50         
UUAGUGCUGGUAAUUGUG--      G  U  --|   U  U           C   UAUCA 
                    CUCUGU CU UC  AGCU CU UACAGUGCUGC UUG     U
                    GAGACA GG AG  UCGG GA AUGUUACGACG AAC     C
ACUCCUCUUCUGCUGAUCUA      A  U  UA^   -  C           -   UGUAU 
.       110       100        90         80        70         60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Eg	He	Re	St	St	St	St

Star sequence

Xla-Mir-103-P2d_5p*

mirBase accession

None

Sequence

0- AGCUUCUUUACAGUGCUGCCUUG -23

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Mature sequence

Xla-Mir-103-P2d_3p

mirBase accession

None

Sequence

37- AGCAGCAUUGUACAGGGCUAUGA -60

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