MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-103-P2

Family name MIR-103 (all species)
Seed GCAGCAU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-103-2
Paralogues Rno-Mir-103-P1  Rno-Mir-103-P4 
Orthologues Aca-Mir-103-P2  Ami-Mir-103-P2  Bta-Mir-103-P2  Cfa-Mir-103-P2  Cli-Mir-103-P2  Cmi-Mir-103-P2  Cpi-Mir-103-P2  Cpo-Mir-103-P2  Dno-Mir-103-P2  Dre-Mir-103-P2a  Dre-Mir-103-P2b  Ete-Mir-103-P2  Gga-Mir-103-P2  Gja-Mir-103-P2  Gmo-Mir-103-P2a  Gmo-Mir-103-P2b  Hsa-Mir-103-P2  Lch-Mir-103-P2  Loc-Mir-103-P2  Mal-Mir-103-P2a  Mal-Mir-103-P2b  Mdo-Mir-103-P2  Mml-Mir-103-P2  Mmu-Mir-103-P2  Mun-Mir-103-P2  Oan-Mir-103-P2  Ocu-Mir-103-P2  Pbv-Mir-103-P2  Pfl-Mir-103  Pma-Mir-103-o2  Pmi-Mir-103  Sha-Mir-103-P2  Sko-Mir-103  Spt-Mir-103-P2  Spu-Mir-103  Sto-Mir-103-P2  Tgu-Mir-103-P2  Tni-Mir-103-P2a  Tni-Mir-103-P2b  Xbo-Mir-103  Xla-Mir-103-P2c  Xla-Mir-103-P2d  Xtr-Mir-103-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Deuterostomia
Genome context
(rn6)
chr3: 123833685-123833744 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACCUCAGCAGAGCUGUCUUCGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUAGCAUUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGGGCUGCCCUUAAGGAA
Get precursor sequence
Structure
        10          20        30          40        50         
CCACCUCAGCAGAGCUG--    C  G     --|   U  U           C   UAGCA 
                   UCUU GU CUUUC  AGCU CU UACAGUGCUGC UUG     U
                   AGAA CA GAAAG  UCGG GA AUGUUACGACG AAC     U
AAGGAAUUCCCGUCGGGUA    C  A     UA^   -  C           -   UGGAC 
.       110       100        90         80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Rno-Mir-103-P2_5p*

mirBase accessionMIMAT0017113
Sequence
0- AGCUUCUUUACAGUGCUGCCUUG -23
Get sequence
Proposed targets TargetScanVert: rno-miR-103-2-5p
miRDB: MIMAT0017113
Mature sequence

Rno-Mir-103-P2_3p

mirBase accessionMIMAT0000824
Sequence
37- AGCAGCAUUGUACAGGGCUAUGA -60
Get sequence
Proposed targets microrna.org: MIMAT0000824
TargetScanVert: rno-miR-103-3p
miRDB: MIMAT0000824