Mir-103-P2a

MirGeneDB ID

Gmo-Mir-103-P2a

Family name

MIR-103 (all species)

Seed

GCAGCAU

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-103-1

Paralogues

Gmo-Mir-103-P2b

Orthologues

Aca-Mir-103-P2 Ami-Mir-103-P2 Bta-Mir-103-P2 Cfa-Mir-103-P2 Cja-Mir-103-P2 Cli-Mir-103-P2 Cmi-Mir-103-P2 Cpi-Mir-103-P2 Cpo-Mir-103-P2 Dno-Mir-103-P2 Dre-Mir-103-P2a Eca-Mir-103-P2 Ete-Mir-103-P2 Gga-Mir-103-P2 Gja-Mir-103-P2 Hmi-Mir-103 Hsa-Mir-103-P2 Laf-Mir-103-P2 Lch-Mir-103-P2 Loc-Mir-103-P2 Mal-Mir-103-P2a Mdo-Mir-103-P2 Mml-Mir-103-P2 Mmr-Mir-103-P2 Mmu-Mir-103-P2 Mun-Mir-103-P2 Neu-Mir-103-P2 Oan-Mir-103-P2 Ocu-Mir-103-P2 Pab-Mir-103-P2 Pbv-Mir-103-P2 Pfl-Mir-103 Pma-Mir-103-o2 Pmi-Mir-103 Rno-Mir-103-P2 Sha-Mir-103-P2 Sko-Mir-103 Spt-Mir-103-P2 Spu-Mir-103 Sro-Mir-103 Sto-Mir-103-P2 Tgu-Mir-103-P2 Tni-Mir-103-P2a Xbo-Mir-103 Xtr-Mir-103-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_2355: 136951-137010 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGCAUUAAACCACUCCGUCCCCGUGUCCUCAGCCUCUUUACGGUGCUGCCUUGUGGCGUCUUGAUCAAGCAGCAUUGUACAGGGCUAUGAGGACACUNNNNNNNNNNNNNNNNNNNNNNN

Get precursor sequence

Structure

        10        20          30          40        50         
CGCAUUAAACCACUCCGUCCCC--        --|   U  U           C   UGGCG 
                        GUGUCCUC  AGCC CU UACGGUGCUGC UUG     U
                        CACAGGAG  UCGG GA AUGUUACGACG AAC     C
NNNNNNNNNNNNNNNNNNNNNNNU        UA^   -  C           -   UAGUU 
.       110       100        90         80        70         60