Mir-103-P2

MirGeneDB ID

Gga-Mir-103-P2

Family name

MIR-103 (all species)

Seed

GCAGCAU

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-103-2

Paralogues

Gga-Mir-103-P1 Gga-Mir-103-P4

Orthologues

Aca-Mir-103-P2 Ami-Mir-103-P2 Bta-Mir-103-P2 Cfa-Mir-103-P2 Cja-Mir-103-P2 Cli-Mir-103-P2 Cmi-Mir-103-P2 Cpi-Mir-103-P2 Cpo-Mir-103-P2 Dno-Mir-103-P2 Dre-Mir-103-P2a Dre-Mir-103-P2b Eca-Mir-103-P2 Ete-Mir-103-P2 Gja-Mir-103-P2 Gmo-Mir-103-P2a Gmo-Mir-103-P2b Hmi-Mir-103 Hsa-Mir-103-P2 Laf-Mir-103-P2 Lch-Mir-103-P2 Loc-Mir-103-P2 Mal-Mir-103-P2a Mal-Mir-103-P2b Mdo-Mir-103-P2 Mml-Mir-103-P2 Mmr-Mir-103-P2 Mmu-Mir-103-P2 Mun-Mir-103-P2 Neu-Mir-103-P2 Oan-Mir-103-P2 Ocu-Mir-103-P2 Pab-Mir-103-P2 Pbv-Mir-103-P2 Pfl-Mir-103 Pma-Mir-103-o2 Pmi-Mir-103 Rno-Mir-103-P2 Sha-Mir-103-P2 Sko-Mir-103 Spt-Mir-103-P2 Spu-Mir-103 Sro-Mir-103 Sto-Mir-103-P2 Tgu-Mir-103-P2 Tni-Mir-103-P2a Tni-Mir-103-P2b Xbo-Mir-103 Xla-Mir-103-P2c Xla-Mir-103-P2d Xtr-Mir-103-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

4: 88526022-88526081 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCUGGACAUGACUGUAUCUCUGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUUGCGUUCAUGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACAGAGGCAUGCUCUUCUCUUGAGUU

Get precursor sequence

Structure

        10          20        30          40        50         
CUCUGGACAUGACUGUA--       G     --|   U  U           C   UUGCG 
                   UCUCUGU CUUUC  AGCU CU UACAGUGCUGC UUG     U
                   GGAGACA GAAAG  UCGG GA AUGUUACGACG AAC     U
UUGAGUUCUCUUCUCGUAC       A     UA^   -  C           -   UGUAC 
.       110       100        90         80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-103-P2_5p*

mirBase accession

MIMAT0026519

Sequence

0- AGCUUCUUUACAGUGCUGCCUUG -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-103-2-5p
miRDB: MIMAT0026519

Mature sequence

Gga-Mir-103-P2_3p

mirBase accession

MIMAT0001145

Sequence

37- AGCAGCAUUGUACAGGGCUAUGA -60

Get sequence

Proposed targets

TargetScanVert: gga-miR-103-3p
miRDB: MIMAT0001145