Mir-103-P4

MirGeneDB ID

Gga-Mir-103-P4

Family name

MIR-103 (all species)

Seed

GCAGCAU

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-103-1

Paralogues

Gga-Mir-103-P1 Gga-Mir-103-P2

Orthologues

Aca-Mir-103-P4 Ami-Mir-103-P4 Bta-Mir-103-P4 Cfa-Mir-103-P4 Cja-Mir-103-P4 Cli-Mir-103-P4 Cmi-Mir-103-P4 Cpi-Mir-103-P4 Cpo-Mir-103-P4 Dno-Mir-103-P4 Eca-Mir-103-P4 Ete-Mir-103-P4 Gja-Mir-103-P4 Hmi-Mir-103 Hsa-Mir-103-P4 Laf-Mir-103-P4 Lch-Mir-103-P4 Loc-Mir-103-P4 Mdo-Mir-103-P4 Mml-Mir-103-P4 Mmr-Mir-103-P4 Mmu-Mir-103-P4 Mun-Mir-103-P4 Neu-Mir-103-P4 Oan-Mir-103-P4 Ocu-Mir-103-P4 Pab-Mir-103-P4 Pbv-Mir-103-P4 Pfl-Mir-103 Pmi-Mir-103 Rno-Mir-103-P4 Sha-Mir-103-P4 Sko-Mir-103 Spt-Mir-103-P4 Spu-Mir-103 Sro-Mir-103 Sto-Mir-103-P4 Tgu-Mir-103-P4 Xbo-Mir-103 Xla-Mir-103-P4 Xtr-Mir-103-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

13: 5440016-5440075 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAUGAAAAGAACAUCUGUCUUGCUGCCUUCGGCUUCUUUACAGUGCUGCCUUGUUGCAUAUGGAUCAAGCAGCAUUGUACAGGGCUAUGAAGGCACUGAGUCUUCUCUACCAAACCCAAG

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Structure

        10          20        30          40        50         
GAUGAAAAGAACAUCUGU--   GC       --|   U  U           C   UUGCA 
                    CUU  UGCCUUC  GGCU CU UACAGUGCUGC UUG     U
                    GAG  ACGGAAG  UCGG GA AUGUUACGACG AAC     A
GAACCCAAACCAUCUCUUCU   UC       UA^   -  C           -   UAGGU 
.       110       100        90         80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-103-P4_5p*

mirBase accession

MIMAT0031070

Sequence

0- GGCUUCUUUACAGUGCUGCCUUG -23

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Proposed targets

TargetScanVert: gga-miR-103-1-5p
miRDB: MIMAT0031070

Mature sequence

Gga-Mir-103-P4_3p

mirBase accession

MIMAT0001145

Sequence

37- AGCAGCAUUGUACAGGGCUAUGA -60

Get sequence

Proposed targets

TargetScanVert: gga-miR-103-3p
miRDB: MIMAT0001145