MirGeneDB ID | Loc-Mir-103-P4 |
Family name |
MIR-103 (all species) |
Seed |
GCAGCAU |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Mir-103-P1
Loc-Mir-103-P2
|
Orthologues |
Aca-Mir-103-P4
Ami-Mir-103-P4
Bta-Mir-103-P4
Cfa-Mir-103-P4
Cja-Mir-103-P4
Cli-Mir-103-P4
Cmi-Mir-103-P4
Cpi-Mir-103-P4
Cpo-Mir-103-P4
Dno-Mir-103-P4
Eca-Mir-103-P4
Ete-Mir-103-P4
Gga-Mir-103-P4
Gja-Mir-103-P4
Hmi-Mir-103
Hsa-Mir-103-P4
Laf-Mir-103-P4
Lch-Mir-103-P4
Mdo-Mir-103-P4
Mml-Mir-103-P4
Mmr-Mir-103-P4
Mmu-Mir-103-P4
Mun-Mir-103-P4
Neu-Mir-103-P4
Oan-Mir-103-P4
Ocu-Mir-103-P4
Pab-Mir-103-P4
Pbv-Mir-103-P4
Pfl-Mir-103
Pmi-Mir-103
Rno-Mir-103-P4
Sha-Mir-103-P4
Sko-Mir-103
Spt-Mir-103-P4
Spu-Mir-103
Sro-Mir-103
Sto-Mir-103-P4
Tgu-Mir-103-P4
Xbo-Mir-103
Xla-Mir-103-P4
Xtr-Mir-103-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (LepOcu1) |
LG6: 35850085-35850144 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACAUGCUGCAGUCCAGAUCUCUUUGCUUUCGGCUUCUUUACAGUGCUGCCUUGUGGCUUGAGAAUCAAGCAGCAUUGUACAGGGCUAUGAAAACUUGGAGAGAUAGCAUCAGCAAUACAC
Get precursor sequence
|
Structure | 10 20 30 40 50
ACAUGCUGCAGUCCAGA-- UUGC --| U U C UGGCU
UCUCU UUUC GGCU CU UACAGUGCUGC UUG U
AGAGG AAAG UCGG GA AUGUUACGACG AAC G
CACAUAACGACUACGAUAG UUCA UA^ - C - UAAGA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Star sequence |
Loc-Mir-103-P4_5p* |
mirBase accession | None |
Sequence |
0- GGCUUCUUUACAGUGCUGCCUUG -23
Get sequence
|
Mature sequence |
Loc-Mir-103-P4_3p |
mirBase accession | None |
Sequence |
37- AGCAGCAUUGUACAGGGCUAUGA -60
Get sequence
|