MirGeneDB ID | Gja-Mir-103-P1 |
Family name |
MIR-103 (all species) |
Seed |
GCAGCAU |
Species |
Schlegels Japanese gecko (Gekko japonicus) |
MiRBase ID |
|
Paralogues |
Gja-Mir-103-P2
Gja-Mir-103-P4
|
Orthologues |
Aca-Mir-103-P1
Ami-Mir-103-P1
Bta-Mir-103-P1
Cfa-Mir-103-P1
Cja-Mir-103-P1
Cli-Mir-103-P1
Cmi-Mir-103-P1
Cpi-Mir-103-P1
Cpo-Mir-103-P1
Dno-Mir-103-P1
Dre-Mir-103-P1a
Dre-Mir-103-P1b
Eca-Mir-103-P1
Ete-Mir-103-P1
Gga-Mir-103-P1
Hmi-Mir-103
Hsa-Mir-103-P1
Laf-Mir-103-P1
Lch-Mir-103-P1
Loc-Mir-103-P1
Mal-Mir-103-P1a
Mdo-Mir-103-P1
Mml-Mir-103-P1
Mmr-Mir-103-P1
Mmu-Mir-103-P1
Mun-Mir-103-P1
Oan-Mir-103-P1
Ocu-Mir-103-P1
Pab-Mir-103-P1
Pbv-Mir-103-P1
Pfl-Mir-103
Pma-Mir-103-o1
Pmi-Mir-103
Rno-Mir-103-P1
Sha-Mir-103-P1
Sko-Mir-103
Spt-Mir-103-P1
Spu-Mir-103
Sro-Mir-103
Sto-Mir-103-P1
Tgu-Mir-103-P1
Tni-Mir-103-P1a
Xbo-Mir-103
Xla-Mir-103-P1c
Xla-Mir-103-P1d
Xtr-Mir-103-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001447785.1_Gekko_japonicus) |
NW_015177082.1: 59994-60053 [-]
|
Precursor (pre-Mir +30nt flank) |
UAAUCCCUAGUCAUCCUUCUCUUUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUGGCAUGGAGUUCAAGCAGCAUUGUACAGGGCUAUCAAAGCAGAGAGAGCUAACCACUGCAAGCAGC
Get precursor sequence
|
Structure | 10 20 30 40 50
UAAUCCCUAGUCAUCCU-- C--| U U C UGGCA
UCUCUUUGCUUU AGCU CU UACAGUGUUGC UUG U
AGAGAGACGAAA UCGG GA AUGUUACGACG AAC G
CGACGAACGUCACCAAUCG CUA^ - C - UUGAG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Gja-Mir-103-P1_5p* |
mirBase accession | None |
Sequence |
0- AGCUUCUUUACAGUGUUGCCUUG -23
Get sequence
|
Mature sequence |
Gja-Mir-103-P1_3p |
mirBase accession | None |
Sequence |
37- AGCAGCAUUGUACAGGGCUAUCA -60
Get sequence
|