Mir-103-P1

MirGeneDB ID

Eca-Mir-103-P1

Family name

MIR-103 (all species)

Seed

GCAGCAU

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-107b

Paralogues

Eca-Mir-103-P2 Eca-Mir-103-P4

Orthologues

Aca-Mir-103-P1 Ami-Mir-103-P1 Bta-Mir-103-P1 Cfa-Mir-103-P1 Cja-Mir-103-P1 Cli-Mir-103-P1 Cmi-Mir-103-P1 Cpi-Mir-103-P1 Cpo-Mir-103-P1 Dno-Mir-103-P1 Dre-Mir-103-P1a Dre-Mir-103-P1b Ete-Mir-103-P1 Gga-Mir-103-P1 Gja-Mir-103-P1 Hmi-Mir-103 Hsa-Mir-103-P1 Laf-Mir-103-P1 Lch-Mir-103-P1 Loc-Mir-103-P1 Mal-Mir-103-P1a Mdo-Mir-103-P1 Mml-Mir-103-P1 Mmr-Mir-103-P1 Mmu-Mir-103-P1 Mun-Mir-103-P1 Oan-Mir-103-P1 Ocu-Mir-103-P1 Pab-Mir-103-P1 Pbv-Mir-103-P1 Pfl-Mir-103 Pma-Mir-103-o1 Pmi-Mir-103 Rno-Mir-103-P1 Sha-Mir-103-P1 Sko-Mir-103 Spt-Mir-103-P1 Spu-Mir-103 Sro-Mir-103 Sto-Mir-103-P1 Tgu-Mir-103-P1 Tni-Mir-103-P1a Xbo-Mir-103 Xla-Mir-103-P1c Xla-Mir-103-P1d Xtr-Mir-103-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009148.1: 38999028-38999087 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUUGAACUAUUCGAUAUUCUCUCUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUGGCAUGGAGUUCAAGCAGCAUUGUACAGGGCUAUCAAAGCACAGAGACCUUGCUACAGCUGAGGCC

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Structure

        10          20        30          40        50         
CUUGAACUAUUCGAUAU--     C      C--|   U  U           C   UGGCA 
                   UCUCU UGCUUU   AGCU CU UACAGUGUUGC UUG     U
                   AGAGA ACGAAA   UCGG GA AUGUUACGACG AAC     G
CCGGAGUCGACAUCGUUCC     C      CUA^   -  C           -   UUGAG 
.       110       100        90         80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-103-P1_5p*

mirBase accession

None

Sequence

0- AGCUUCUUUACAGUGUUGCCUUG -23

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Mature sequence

Eca-Mir-103-P1_3p

mirBase accession

MIMAT0012886

Sequence

37- AGCAGCAUUGUACAGGGCUAUCA -60

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