MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-103-P1

Family name MIR-103 (all species)
Seed GCAGCAU
Species American alligator (Alligator mississippiensis)
MiRBase ID
Paralogues Ami-Mir-103-P2  Ami-Mir-103-P4 
Orthologues Aca-Mir-103-P1  Bta-Mir-103-P1  Cfa-Mir-103-P1  Cja-Mir-103-P1  Cli-Mir-103-P1  Cmi-Mir-103-P1  Cpi-Mir-103-P1  Cpo-Mir-103-P1  Dno-Mir-103-P1  Dre-Mir-103-P1a  Dre-Mir-103-P1b  Eca-Mir-103-P1  Ete-Mir-103-P1  Gga-Mir-103-P1  Gja-Mir-103-P1  Hmi-Mir-103  Hsa-Mir-103-P1  Laf-Mir-103-P1  Lch-Mir-103-P1  Loc-Mir-103-P1  Mal-Mir-103-P1a  Mdo-Mir-103-P1  Mml-Mir-103-P1  Mmr-Mir-103-P1  Mmu-Mir-103-P1  Mun-Mir-103-P1  Oan-Mir-103-P1  Ocu-Mir-103-P1  Pab-Mir-103-P1  Pbv-Mir-103-P1  Pfl-Mir-103  Pma-Mir-103-o1  Pmi-Mir-103  Rno-Mir-103-P1  Sha-Mir-103-P1  Sko-Mir-103  Spt-Mir-103-P1  Spu-Mir-103  Sro-Mir-103  Sto-Mir-103-P1  Tgu-Mir-103-P1  Tni-Mir-103-P1a  Xbo-Mir-103  Xla-Mir-103-P1c  Xla-Mir-103-P1d  Xtr-Mir-103-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017708881.1: 6617839-6617898 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AUGCAUAUUUUCAGUAUUCUCUUUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUGGCAUGGAGUUCAAGCAGCAUUGUACAGGGCUAUCAAAGCGGAGAGAGCUGCAGCAAAGUGACAUG
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Structure
        10          20        30          40        50         
AUGCAUAUUUUCAGUAU--            C--|   U  U           C   UGGCA 
                   UCUCUUUGCUUU   AGCU CU UACAGUGUUGC UUG     U
                   AGAGAGGCGAAA   UCGG GA AUGUUACGACG AAC     G
GUACAGUGAAACGACGUCG            CUA^   -  C           -   UUGAG 
.       110       100        90         80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Ami-Mir-103-P1_5p*
mirBase accessionNone
Sequence 
0- AGCUUCUUUACAGUGUUGCCUUG -23
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Mature sequence

Ami-Mir-103-P1_3p
mirBase accessionNone
Sequence 
37- AGCAGCAUUGUACAGGGCUAUCA -60
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