MirGeneDB ID | Bla-Mir-103-P7 |
Family name |
MIR-103 (all species) |
Seed |
AGCAGCA |
Species |
European lancelet (Branchiostoma lanceolatum) |
MiRBase ID |
|
Paralogues |
Bla-Mir-103-P5
Bla-Mir-103-P6
Bla-Mir-103-P8
|
Orthologues |
Bfl-Mir-103-P7
Hmi-Mir-103
Pfl-Mir-103
Pmi-Mir-103
Sko-Mir-103
Spu-Mir-103
Sro-Mir-103
Xbo-Mir-103
|
Node of Origin (locus) |
Branchiostoma
|
Node of Origin (family) |
Bilateria
|
Genome context (BraLan2) |
Sc0000082: 845654-845713 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGGAGGAAGCGGCUGGUGCCGGCGCCCCUGACUGCUGCUUCCUGCUGCCUUGGGGAAUAUCAACCACCAAGCAGCAGUGUGCAGUGGUGAGGGUCGUACGGCUCAGGCUACAAACACAAG
Get precursor sequence
|
Structure | 10 20 30 40 50
AGGAGGAAGCGGCUGGU- -| C G UG UUC C GGAAUA
GCCG GCG CCCU AC CUGC CUGCUGC UUGG \
CGGC UGC GGGA UG GACG GACGACG AACC U
GAACACAAACAUCGGACU A^ U G GU UGU - ACCAAC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Bla-Mir-103-P7_5p* |
mirBase accession | None |
Sequence |
0- ACUGCUGCUUCCUGCUGCCUUGG -23
Get sequence
|
Mature sequence |
Bla-Mir-103-P7_3p |
mirBase accession | None |
Sequence |
38- AAGCAGCAGUGUGCAGUGGUGA -60
Get sequence
|