MirGeneDB 3.0

MirGeneDB ID

Bla-Mir-103-P7

Family name MIR-103 (all species)
Seed AGCAGCA
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-103-P5  Bla-Mir-103-P6  Bla-Mir-103-P8 
Orthologues Bfl-Mir-103-P7  Hmi-Mir-103  Pfl-Mir-103  Pmi-Mir-103  Sko-Mir-103  Spu-Mir-103  Sro-Mir-103  Xbo-Mir-103 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(BraLan2)
Sc0000082: 845654-845713 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AGGAGGAAGCGGCUGGUGCCGGCGCCCCUGACUGCUGCUUCCUGCUGCCUUGGGGAAUAUCAACCACCAAGCAGCAGUGUGCAGUGGUGAGGGUCGUACGGCUCAGGCUACAAACACAAG
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Structure
        10         20         30        40        50          
AGGAGGAAGCGGCUGGU-    -|  C    G  UG    UUC       C    GGAAUA 
                  GCCG GCG CCCU AC  CUGC   CUGCUGC UUGG      \
                  CGGC UGC GGGA UG  GACG   GACGACG AACC      U
GAACACAAACAUCGGACU    A^  U    G  GU    UGU       -    ACCAAC 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Bla-Mir-103-P7_5p*

mirBase accessionNone
Sequence
0- ACUGCUGCUUCCUGCUGCCUUGG -23
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Mature sequence

Bla-Mir-103-P7_3p

mirBase accessionNone
Sequence
38- AAGCAGCAGUGUGCAGUGGUGA -60
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