| MirGeneDB ID | Bla-Mir-4057 |
|---|
| Family name |
MIR-4057 (all species) |
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| Seed |
UUGCUAC |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bfl-Mir-4057
Cin-Mir-4057
|
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| Node of Origin (locus) |
Chordata
|
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| Node of Origin (family) |
Chordata
|
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Genome context
(BraLan2) |
Sc0000279: 312688-312746 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GGCCCCCUCCCACCCGUGCUGUGGGUGCCCAUCUUGGUGGUGUAGCAGCUGUGAGAUGUGAGCCACAUUUGCUACGGCCACCAAGAUCUGUGCCAGCAGUGUUCCUCUUCUUUCUUCCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGCCCCCUCCCACCCGU-- G UG CC -| C UGAGAU
GCUGU GG C AUCUUGGUGG UGUAGCAG UG G
UGACG CC G UAGAACCACC GCAUCGUU AC U
UCCUUCUUUCUUCUCCUUG A GU UC G^ U ACCGAG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Bla-Mir-4057_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AUCUUGGUGGUGUAGCAGCUG -21
Get sequence
|
|---|
| Mature sequence |
Bla-Mir-4057_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UUUGCUACGGCCACCAAGAUCU -59
Get sequence
|
|---|
