| MirGeneDB ID | Cin-Mir-4057 |
|---|
| Family name |
MIR-4057 (all species) |
|---|
| Seed |
UUGCUAC |
|---|
| Species |
Sea Squirt (Ciona intestinalis) |
|---|
| MiRBase ID |
cin-mir-4057
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bfl-Mir-4057
Bla-Mir-4057
|
|---|
| Node of Origin (locus) |
Chordata
|
|---|
| Node of Origin (family) |
Chordata
|
|---|
Genome context
(ci3) |
8: 5547196-5547250 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUUGUAGCGGGACCAACGUAUCACAGCGAAGGCUUGGCGACUGUAGCAUAACACGGAUAGUGUUUGCUACUUUCACCAAGAUCAGCGCUGUCUUGUCAAAGCAACCCUGCUAUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUUGUAGCGGGACCAACGUAUC-- AA -| C CU U CGG
ACAGCG GG CUUGG GA GUAGCA AACA \
UGUCGC CU GAACC CU CAUCGU UUGU A
UUUAUCGUCCCAACGAAACUGUUC GA A^ A UU - GAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Cin-Mir-4057_5p* |
| mirBase accession | MIMAT0016603 |
|---|
| Sequence |
0- GGCUUGGCGACUGUAGCAUAACA -23
Get sequence
|
|---|
| Mature sequence |
Cin-Mir-4057_3p |
| mirBase accession | MIMAT0016604 |
|---|
| Sequence |
32- UUUGCUACUUUCACCAAGAUCAG -55
Get sequence
|
|---|
