MirGeneDB 3.0
MirGeneDB ID

Bla-Mir-4872-P10a

Family name MIR-4872 (all species)
Seed UGCGGGG
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-4872-P1  Bla-Mir-4872-P2  Bla-Mir-4872-P3  Bla-Mir-4872-P4  Bla-Mir-4872-P5  Bla-Mir-4872-P6a  Bla-Mir-4872-P6b  Bla-Mir-4872-P6c  Bla-Mir-4872-P7a  Bla-Mir-4872-P7b  Bla-Mir-4872-P8  Bla-Mir-4872-P9a  Bla-Mir-4872-P9b  Bla-Mir-4872-P9c  Bla-Mir-4872-P10b  Bla-Mir-4872-P11a  Bla-Mir-4872-P11b  Bla-Mir-4872-P12  Bla-Mir-4872-P13  Bla-Mir-4872-P14a  Bla-Mir-4872-P14b  Bla-Mir-4872-P15  Bla-Mir-4872-P16  Bla-Mir-4872-P17  Bla-Mir-4872-P18  Bla-Mir-4872-P19  Bla-Mir-4872-P20  Bla-Mir-4872-P21  Bla-Mir-4872-P22a  Bla-Mir-4872-P22b  Bla-Mir-4872-P22c  Bla-Mir-4872-P23  Bla-Mir-4872-P24  Bla-Mir-4872-P25a  Bla-Mir-4872-P25b  Bla-Mir-4872-P25c  Bla-Mir-4872-P26a  Bla-Mir-4872-P26b  Bla-Mir-4872-P26c  Bla-Mir-4872-P27  Bla-Mir-4872-P28  Bla-Mir-4872-P29  Bla-Mir-4872-P30a  Bla-Mir-4872-P30b  Bla-Mir-4872-P30c  Bla-Mir-4872-P31a  Bla-Mir-4872-P31b 
Orthologues
Node of Origin (locus) B. lanceolatum
Node of Origin (family) Branchiostoma
Genome context
(BraLan2)		 Sc0000763: 6063-6119 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUGCUCACAUCGAUGUUGGUCUUACUGGUUUUGCGGGGGGCUCACAUCAUGUUGUCAUCUGGUAAAUGAUGUAACUCCCCUGCAACCUCAUAGGGCCUGUCAGCAACAACAUGUCGA
Get precursor sequence
Structure
        10           20        30        40        50        
UUGCUCACAUCGAUGUU---|      C   UU          CUC       GUUGUCA 
                    GGUCUUA UGG  UUGCGGGGGG   ACAUCAU       \
                    CCGGGAU ACU  AACGUCCCCU   UGUAGUA       U
AGCUGUACAACAACGACUGU^      -   CC          CAA       AAUGGUC 
     110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ad Ad Em Em Em Em
Mature sequence

Bla-Mir-4872-P10a_5p
mirBase accessionNone
Sequence 
0- UUGCGGGGGGCUCACAUCAUGU -22
Get sequence
Star sequence

Bla-Mir-4872-P10a_3p*
mirBase accessionNone
Sequence 
35- AUGAUGUAACUCCCCUGCAACC -57
Get sequence