Mir-4872-P4

MirGeneDB ID

Bla-Mir-4872-P4

Family name

MIR-4872 (all species)

Seed

GCUGAGG

Species

European lancelet (Branchiostoma lanceolatum)

MiRBase ID

Paralogues

Bla-Mir-4872-P1 Bla-Mir-4872-P2 Bla-Mir-4872-P3 Bla-Mir-4872-P5 Bla-Mir-4872-P6a Bla-Mir-4872-P6b Bla-Mir-4872-P6c Bla-Mir-4872-P7a Bla-Mir-4872-P7b Bla-Mir-4872-P8 Bla-Mir-4872-P9a Bla-Mir-4872-P9b Bla-Mir-4872-P9c Bla-Mir-4872-P10a Bla-Mir-4872-P10b Bla-Mir-4872-P11a Bla-Mir-4872-P11b Bla-Mir-4872-P12 Bla-Mir-4872-P13 Bla-Mir-4872-P14a Bla-Mir-4872-P14b Bla-Mir-4872-P15 Bla-Mir-4872-P16 Bla-Mir-4872-P17 Bla-Mir-4872-P18 Bla-Mir-4872-P19 Bla-Mir-4872-P20 Bla-Mir-4872-P21 Bla-Mir-4872-P22a Bla-Mir-4872-P22b Bla-Mir-4872-P22c Bla-Mir-4872-P23 Bla-Mir-4872-P24 Bla-Mir-4872-P25a Bla-Mir-4872-P25b Bla-Mir-4872-P25c Bla-Mir-4872-P26a Bla-Mir-4872-P26b Bla-Mir-4872-P26c Bla-Mir-4872-P27 Bla-Mir-4872-P28 Bla-Mir-4872-P29 Bla-Mir-4872-P30a Bla-Mir-4872-P30b Bla-Mir-4872-P30c Bla-Mir-4872-P31a Bla-Mir-4872-P31b

Orthologues

Node of Origin (locus)

B. lanceolatum

Node of Origin (family)

Branchiostoma

Genome context
(BraLan2)

Sc0000763: 3382-3441 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UUAGCAUGUCUUUCCUUUGUCACUAUAGUGUGCUGAGGGUAUCGAGUUUAUGUGUUCAGUUUACCAACAUCGACUCGUUUCCUCAGCCCCCUAUGGGAGCCAACACUUCAACGUGCUUCA

Get precursor sequence

Structure

        10          20        30        40        50          
UUAGCAUGUCUUUCCUUU--| CA      UGU        UAU      U    GUUCAG 
                    GU  CUAUAG   GCUGAGGG   CGAGUU AUGU      \
                    CG  GGUAUC   CGACUCCU   GCUCAG UACA      U
ACUUCGUGCAACUUCACAAC^ AG      CCC        UU-      C    ACCAUU 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Em	Em	Em	Em

Mature sequence

Bla-Mir-4872-P4_5p

mirBase accession

None

Sequence

0- UGCUGAGGGUAUCGAGUUUAUGU -23

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Co-mature sequence

Bla-Mir-4872-P4_3p

mirBase accession

None

Sequence

38- AUCGACUCGUUUCCUCAGCCCC -60

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