MirGeneDB 2.1
MirGeneDB ID

Bla-Mir-4872-P19

Family name MIR-4872 (all species)
Seed GCUGGGG
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-4872-P1  Bla-Mir-4872-P2  Bla-Mir-4872-P3  Bla-Mir-4872-P4  Bla-Mir-4872-P5  Bla-Mir-4872-P6a  Bla-Mir-4872-P6b  Bla-Mir-4872-P6c  Bla-Mir-4872-P7a  Bla-Mir-4872-P7b  Bla-Mir-4872-P8  Bla-Mir-4872-P9a  Bla-Mir-4872-P9b  Bla-Mir-4872-P9c  Bla-Mir-4872-P10a  Bla-Mir-4872-P10b  Bla-Mir-4872-P11a  Bla-Mir-4872-P11b  Bla-Mir-4872-P12  Bla-Mir-4872-P13  Bla-Mir-4872-P14a  Bla-Mir-4872-P14b  Bla-Mir-4872-P15  Bla-Mir-4872-P16  Bla-Mir-4872-P17  Bla-Mir-4872-P18  Bla-Mir-4872-P20  Bla-Mir-4872-P21  Bla-Mir-4872-P22a  Bla-Mir-4872-P22b  Bla-Mir-4872-P22c  Bla-Mir-4872-P23  Bla-Mir-4872-P24  Bla-Mir-4872-P25a  Bla-Mir-4872-P25b  Bla-Mir-4872-P25c  Bla-Mir-4872-P26a  Bla-Mir-4872-P26b  Bla-Mir-4872-P26c  Bla-Mir-4872-P27  Bla-Mir-4872-P28  Bla-Mir-4872-P29  Bla-Mir-4872-P30a  Bla-Mir-4872-P30b  Bla-Mir-4872-P30c  Bla-Mir-4872-P31a  Bla-Mir-4872-P31b 
Orthologues
Node of Origin (locus) B. lanceolatum
Node of Origin (family) Branchiostoma
Genome context
(BraLan2)		 Sc0000044: 1588092-1588152 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CCAUAGUAUAUUUCCUGCAUCACUAUAAAGUGCUGGGGAAUAUAAGUUUAUGUGUUUAUUUCUACCCACAUAAACUUGUUUCCACAGCACUCUAUGGGAUACUCUGCCAUCUGGUGCCAAA
Get precursor sequence
Structure
        10           20        30        40        50        60
CCAUAGUAUAUUUCCUGC---|  A     A       G    U            GUUUAU 
                     AUC CUAUA AGUGCUG GGAA AUAAGUUUAUGU      U
                     UAG GGUAU UCACGAC CCUU UGUUCAAAUACA      U
AAACCGUGGUCUACCGUCUCA^  -     C       A    -            CCCAUC 
 .       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Em Em Em Em
Mature sequence

Bla-Mir-4872-P19_5p
mirBase accessionNone
Sequence 
0- UGCUGGGGAAUAUAAGUUUAUGU -23
Get sequence
Star sequence

Bla-Mir-4872-P19_3p*
mirBase accessionNone
Sequence 
39- AUAAACUUGUUUCCACAGCACU -61
Get sequence