MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-3431

Family name MIR-3431 (all species)
Seed CUCAGUC
Species Cow (Bos taurus)
MiRBase ID bta-mir-3431
Paralogues
Orthologues
Node of Origin (locus) B. taurus
Node of Origin (family) B. taurus
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037357.1: 34445022-34445083 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-3431)		 Mir-3431 NC_037357.1: 34445022-34445083 [-] UCSC Ensembl
Mir-224 NC_037357.1: 34446942-34447010 [-] UCSC Ensembl
Mir-452-v1 NC_037357.1: 34447982-34448042 [-] UCSC Ensembl
Mir-452-v2 NC_037357.1: 34447983-34448039 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGGACACGAUACCCAAUGAAUGCGAAAACCUCAGUCAGCCUUGUGGAUGUAUGUUCUGCAGACCUGACAUCUAGAGGACUGACUGAAAUUUUCACUUUCAGCUAAUUCUUCUAUUUUCUU
Get precursor sequence
Structure
        10          20        30        40         50        60
CAAGGACACGAUACCCAA--    UGC     CC        -|   G       AUGUUCU 
                    UGAA   GAAAA  UCAGUCAG CCUU UGGAUGU       G
                    ACUU   CUUUU  AGUCAGUC GGAG AUCUACA       C
UUCUUUUAUCUUCUUAAUCG    UCA     AA        A^   -       GUCCAGA 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
CommentThere is variation in both the Drosha and Dicer cuts but this represents the highest set of reads.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-3431_5p
mirBase accessionMIMAT0017394
Sequence 
0- CCUCAGUCAGCCUUGUGGAUGU -22
Get sequence
Proposed targets TargetScanVert: bta-miR-3431
Star sequence

Bta-Mir-3431_3p*
mirBase accessionNone
Sequence 
40- AUCUAGAGGACUGACUGAAAUU -62
Get sequence