Mir-452-v1

MirGeneDB ID

Bta-Mir-452-v1

Family name

MIR-452 (all species)

Seed

ACUGUUU

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-452

Paralogues

Bta-Mir-452-v2

Orthologues

Cfa-Mir-452-v1 Cja-Mir-452-v1 Cpo-Mir-452-v1 Ete-Mir-452-v1 Hsa-Mir-452-v1 Laf-Mir-452 Mml-Mir-452-v1 Mmr-Mir-452-v1 Mmu-Mir-452-v1 Ocu-Mir-452-v1 Pab-Mir-452-v1 Rno-Mir-452-v1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 34447982-34448042 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-452-v1)

Mir-3431 NC_037357.1: 34445022-34445083 [-] UCSC Ensembl
Mir-224 NC_037357.1: 34446942-34447010 [-] UCSC Ensembl
Mir-452-v1 NC_037357.1: 34447982-34448042 [-] UCSC Ensembl
Mir-452-v2 NC_037357.1: 34447983-34448039 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUCCUGUCUUAUAAAUGCUAAGCACUUACAACUGUUUGCAGAGGAAACUGAGACUUUGUAACUAUAUCUCAGUCUCAUCUGCAAAGAAGUAAGUGCUUUGCCAAGCCCCGGAGAGGGUAG

Get precursor sequence

Structure

        10          20        30        40        50        60 
GCUCCUGUCUUAUAAAU--| U          AA  GU       G  A       CUUUGU 
                   GC AAGCACUUAC  CU  UUGCAGA GA ACUGAGA      \
                   CG UUCGUGAAUG  GA  AACGUCU CU UGACUCU      A
GAUGGGAGAGGCCCCGAAC^ U          AA  --       A  C       AUAUCA 
 .       110       100        90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-452-v1_5p

mirBase accession

MIMAT0009324

Sequence

0- AACUGUUUGCAGAGGAAACUGAGA -24

Get sequence

Proposed targets

TargetScanVert: bta-miR-452

Star sequence

Bta-Mir-452-v1_3p*

mirBase accession

None

Sequence

39- UCAGUCUCAUCUGCAAAGAAGU -61

Get sequence