MirGeneDB ID | Cja-Mir-452-v1 |
Family name |
MIR-452 (all species) |
Seed |
ACUGUUU |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
Cja-Mir-452-v2
|
Orthologues |
Bta-Mir-452-v1
Cfa-Mir-452-v1
Cpo-Mir-452-v1
Ete-Mir-452-v1
Hsa-Mir-452-v1
Laf-Mir-452
Mml-Mir-452-v1
Mmr-Mir-452-v1
Mmu-Mir-452-v1
Ocu-Mir-452-v1
Pab-Mir-452-v1
Rno-Mir-452-v1
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 143634333-143634393 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCUCCUGACUUCUAAUUGCUAAGCACUUACAACUGUUUGCAGAGGAAACUGAGACUUUGUAACUAUGUCUCAGUCUUAUCUGCAAAGAAGUAAGUGCUUUGCCAAGCCCCUUGAGAGAUUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCUCCUGACUUCUAAUU--| U AA GU G A CUUUGU
GC AAGCACUUAC CU UUGCAGA GA ACUGAGA \
CG UUCGUGAAUG GA AACGUCU UU UGACUCU A
AUUAGAGAGUUCCCCGAAC^ U AA -- A C GUAUCA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cja-Mir-452-v1_5p |
mirBase accession | None |
Sequence |
0- AACUGUUUGCAGAGGAAACUGAGA -24
Get sequence
|
Star sequence |
Cja-Mir-452-v1_3p* (predicted) |
mirBase accession | None |
Sequence |
39- UCAGUCUUAUCUGCAAAGAAGU -61
Get sequence
|