| MirGeneDB ID | Cja-Mir-452-v1 |
|---|---|
| Family name | MIR-452 (all species) |
| Seed | ACUGUUU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-452-v2 |
| Orthologues | Bta-Mir-452-v1 Cfa-Mir-452-v1 Cpo-Mir-452-v1 Ete-Mir-452-v1 Hsa-Mir-452-v1 Laf-Mir-452 Mml-Mir-452-v1 Mmr-Mir-452-v1 Mmu-Mir-452-v1 Ocu-Mir-452-v1 Pab-Mir-452-v1 Rno-Mir-452-v1 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 143634333-143634393 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GCUCCUGACUUCUAAUUGCUAAGCACUUACAACUGUUUGCAGAGGAAACUGAGACUUUGUAACUAUGUCUCAGUCUUAUCUGCAAAGAAGUAAGUGCUUUGCCAAGCCCCUUGAGAGAUUAGet precursor sequence |
| Structure | 10 20 30 40 50 60 GCUCCUGACUUCUAAUU--| U AA GU G A CUUUGU GC AAGCACUUAC CU UUGCAGA GA ACUGAGA \ CG UUCGUGAAUG GA AACGUCU UU UGACUCU A AUUAGAGAGUUCCCCGAAC^ U AA -- A C GUAUCA . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-452-v1_5p |
| mirBase accession | None |
| Sequence |
0- AACUGUUUGCAGAGGAAACUGAGA -24
Get sequence
|
| Star sequence | Cja-Mir-452-v1_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- UCAGUCUUAUCUGCAAAGAAGU -61
Get sequence
|
