MirGeneDB 2.1

MirGeneDB ID

Cbr-Lsy-6

Family name LSY-6 (all species)
Seed UUUGUAU
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-lsy-6
Paralogues
Orthologues Cel-Lsy-6 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Caenorhabditis
Genome context
(CB4)
V: 10397389-10397454 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CGUCCUAACUAUUGUCAUGAACCUUCCACAGAAUGCGUCCAGUAUCAAAAUCACAUCAAAGAGAAUACGGUGGAUUUUGUAUGAGACGCAUUCCGUGGCGGGAACAUUAAAGAUCGCCCAUCGGAA
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Structure
        10        20           30        40        50        60  
CGUCCUAACUAUUGUCAUGAA---|  U    A         CA   U       ACAUCAAAG 
                        CCU CCAC GAAUGCGUC  GUA CAAAAUC         A
                        GGG GGUG CUUACGCAG  UAU GUUUUAG         G
AAGGCUACCCGCUAGAAAUUACAA^  C    C         AG   -       GUGGCAUAA 
    120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Star sequence

Cbr-Lsy-6_5p*

mirBase accessionNone
Sequence
0- GAAUGCGUCCAGUAUCAAAAUC -22
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Mature sequence

Cbr-Lsy-6_3p

mirBase accessionMIMAT0000767
Sequence
44- UUUUGUAUGAGACGCAUUCCGU -66
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