MirGeneDB 3.0

MirGeneDB ID

Cel-Lsy-6

Family name LSY-6 (all species)
Seed UUUGUAU
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-lsy-6
Paralogues
Orthologues Cbr-Lsy-6 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Caenorhabditis
Genome context
(ce11)
chrV: 10647237-10647301 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCCUACUAAUUUCUGAAAAAUAAGCCAUCAAAUGCGUCUAGUAUCAAAAUCAUGUAAAAACUGUAAAACAGAUUUUGUAUGAGACGCAUUUCGAUGACGGGCACAACAGAGACACCGCCCAUAA
Get precursor sequence
Structure
        10        20            30         40        50        60  
UUCCUACUAAUUUCUGAAAAAUAA   ----   -|         A   U       AUGUAAAAA 
                        GCC    AUC AAAUGCGUCU GUA CAAAAUC         \
                        CGG    UAG UUUACGCAGA UAU GUUUUAG         C
AAUACCCGCCACAGAGACAACA--   GCAG   C^         G   -       ACAAAAUGU 
   120       110         100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Lsy-6_5p*

mirBase accessionMIMAT0031896
Sequence
0- AAAUGCGUCUAGUAUCAAAAUC -22
Get sequence
Mature sequence

Cel-Lsy-6_3p

mirBase accessionMIMAT0000749
Sequence
43- UUUUGUAUGAGACGCAUUUCGA -65
Get sequence
Proposed targets microrna.org: MIMAT0000749
TargetScanWorm: cel-lsy-6