| MirGeneDB ID | Cbr-Mir-1817 |
|---|
| Family name |
MIR-1817 (all species) |
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| Seed |
AGCCAAU |
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| Species |
Roundworm (Caenorhabditis briggsae) |
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| MiRBase ID |
cbr-mir-1817
|
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| Paralogues |
|
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| Orthologues |
Cel-Mir-1817
|
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| Node of Origin (locus) |
Caenorhabditis
|
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| Node of Origin (family) |
Caenorhabditis
|
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Genome context
(CB4) |
I: 11435405-11435486 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGCAAAAAAGAAAUCCAUUCAUAUUUUGAGCAGCCAAUGCCACGACUGUCAUGGUCUAAAAAUCCGAUAGCUGGAUAAUCCGAUAGUUCAUGACAGUGGUACAUUGUCUACUCGAAAUUUUUGAAAGAUACGUGUACGUAUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70
UGCAAAAAAGAAAUCCAU U--| C C CC G GUCUAAAAAUCCGAUAG
UCA AUUUUGAG AG CAAUG AC ACUGUCAUG \
AGU UAAAGCUC UC GUUAC UG UGACAGUAC C
AUAUGCAUGUGCAUAGAA UUU^ A U A- G UUGAUAGCCUAAUAGGU
140 130 120 110 100 90 80 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Ea |
Ma |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Yo |
Yo |
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| Mature sequence |
Cbr-Mir-1817_5p |
| mirBase accession | MIMAT0011486 |
|---|
| Sequence |
0- CAGCCAAUGCCACGACUGUCAUG -23
Get sequence
|
|---|
| Star sequence |
Cbr-Mir-1817_3p* |
| mirBase accession | None |
|---|
| Sequence |
60- UGACAGUGGUACAUUGUCUACU -82
Get sequence
|
|---|
